Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04079 ATGAAATTGGAATATGATATTAAGAGCTTGTGGAAAACTCATGCTTCTGATGAAAGCAACCATTTTTTAAGCGACTATCAACGAGGCGAGGAAGAAGAAACACTCTCGGCGGTGACAACAACTCGCAAATCAACCGCATCAATGGCCAAGCAGATCCACGAGATCAAGGATTTTCTTCTGACGGCGCGTAGAAAGGACGCCAGATCAGTGAAAATCAAGAGAAGCAAGGATGTGGTTAAGTTCAAGTTTGATCAGCCATGTGTAAAATTTCATGCTTTCAGAGAGATGTCTGGGAGAGATAATGGTAAAAGGAAAGACAGTCCAACAAGCTTCAGTTATCTTGACCCAATGGCCTTGTATAAACGTCGAAATCAGTCGGTTGATATCCAGGAGCCTGGTTTCACATTCCGGCCAGCTACATTTCAGCCATATGCACAGGAGCCTGGTTCCACTCCACTCGCATTTCAGCCATCTGGATATTAG 483 0.441 MKLEYDIKSLWKTHASDESNHFLSDYQRGEEEETLSAVTTTRKSTASMAKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKFDQPCVKFHAFREMSGRDNGKRKDSPTSFSYLDPMALYKRRNQSVDIQEPGFTFRPATFQPYAQEPGSTPLAFQPSGY 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04079 160 PANTHER 60S RIBOSOMAL PROTEIN L38 48 83 IPR002675 GO:0003735|GO:0005840|GO:0006412
Trre7g04079 160 Gene3D - 48 90 IPR038464 -
Trre7g04079 160 MobiDBLite consensus disorder prediction 140 160 - -
Trre7g04079 160 Pfam Ribosomal L38e protein family 50 82 IPR002675 GO:0003735|GO:0005840|GO:0006412
Trre7g04079 160 MobiDBLite consensus disorder prediction 144 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04079 Trre-Chr7 49039348 49042848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04079 48 82 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.286 3.21e-16 67.4