Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g04070 | ATGTCGGATGAGGATGAGTATCGTTGTTTTGTTGGCGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACTGAGGCCAAGGTGGTTGTTGATAAATTTTCTGGACGCTCTCGCGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAAATAGGGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGTGACCGTGATCGAGATTATCGAGGTGGAGGTGGTCGAGGATCTAGTGATGGAGGATGCTTTAATTGTGGCAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGGAGAGGGGGAAGGTATGGTGGCAGAGAAAGTAGATATGGTGGAAGCGGTGGCGGTGGTGGTCACTATGGTCCTGATAGAAACGGAGATCGTTCTTCTGGTGGTCGCAGCAGGGATGCTGGCAGTCGTGGAGATTCTGGAAATGATCGATACTACCGTGATCGTGATCGTGCTGGACCGTATGAACGAGAACGACGTGGATCTGGAGGCTATCGCTGA | 639 | 0.4757 | MSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGIDLDGRTITVDKAQPQQGSNRDDGDRYRERGRDRDRDRDYRGGGGRGSSDGGCFNCGKPGHFARECPSEGGRGGRYGGRESRYGGSGGGGGHYGPDRNGDRSSGGRSRDAGSRGDSGNDRYYRDRDRAGPYERERRGSGGYR | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g04070 | 212 | MobiDBLite | consensus disorder prediction | 169 | 212 | - | - | |
| Trre7g04070 | 212 | ProSiteProfiles | Zinc finger CCHC-type profile. | 123 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
| Trre7g04070 | 212 | CDD | RRM2_NsCP33_like | 8 | 83 | - | - | |
| Trre7g04070 | 212 | Pfam | Zinc knuckle | 122 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
| Trre7g04070 | 212 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 117 | IPR035979 | GO:0003676 | |
| Trre7g04070 | 212 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 10 | 79 | IPR000504 | GO:0003723 | |
| Trre7g04070 | 212 | SMART | c2hcfinal6 | 122 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
| Trre7g04070 | 212 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 1 | 206 | - | - | |
| Trre7g04070 | 212 | SUPERFAMILY | Retrovirus zinc finger-like domains | 105 | 143 | IPR036875 | GO:0003676|GO:0008270 | |
| Trre7g04070 | 212 | Gene3D | - | 1 | 118 | IPR012677 | - | |
| Trre7g04070 | 212 | MobiDBLite | consensus disorder prediction | 78 | 212 | - | - | |
| Trre7g04070 | 212 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
| Trre7g04070 | 212 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
| Trre7g04070 | 212 | MobiDBLite | consensus disorder prediction | 88 | 114 | - | - | |
| Trre7g04070 | 212 | Gene3D | - | 119 | 179 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g04070 | Trre-Chr7 | 48904860 | 48905788 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g04070 | 9 | 98 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 37.778 | 7.15e-08 | 50.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g04070 | - | - | gmx:100815224 | 230.335 |