Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04052 ATGGGAGATCATAATAACAACAATGTTAATCTTCCACCCGGTTTTCGATTTTATCCAACAGATGAAGAACTTGTGGTCCATTTCCTTCATCGAAAGGCGTCGCTTTTACCTTGTCATCCGGATGTTATTCCTGATCTTGACCTCTATCCATTTGATCCATGGCAACTTCAAGGAAGAGCTTTGGAAGAGGGAAATCAATGGTACTATTATAGTAGAAGGACACAAAATAGAATGACTAATAATGGTTATTGGATGCCAATGGGAATGGAAGAACAAGTTTTAACAAGCTCAAGTAATAAGAGAGTTGGTATGAAGAAATATTATGTTTTCCATATTGGTGAATCACCTGATGGTAACAAAACTAATTGGATAATGCAAGAGTATCGTCTTTCCGATTCCGCTTCTTCCTCTACTAGATCATCTTCTTCCAAAAGAAAATCAAAATCAGAACATAGTAGGTGGGTAATATGTCGAGTTTATGAACATGATGAAGATGATGATCAGGATGGAGATGGAACAGAATTGTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 588 0.3673 MGDHNNNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRTQNRMTNNGYWMPMGMEEQVLTSSSNKRVGMKKYYVFHIGESPDGNKTNWIMQEYRLSDSASSSTRSSSSKRKSKSEHSRWVICRVYEHDEDDDQDGDGTELSCLDEVFLSLDDLDEVSLPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04052 195 ProSiteProfiles NAC domain profile. 11 162 IPR003441 GO:0003677|GO:0006355
Trre7g04052 195 FunFam NAC domain-containing protein 104 20 165 - -
Trre7g04052 195 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Trre7g04052 195 Pfam No apical meristem (NAM) protein 12 130 IPR003441 GO:0003677|GO:0006355
Trre7g04052 195 Gene3D NAC domain 20 166 IPR036093 GO:0003677|GO:0006355
Trre7g04052 195 PANTHER NAC TRANSCRIPTION FACTOR 56 11 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04052 Trre-Chr7 48748534 48749402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04052 10 189 NAC Transcription Factor Family AT1G69490 39.062 2.72e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g04052 NAM 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04052 - - gmx:100788893 315.464