Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04049 ATGAGGACTTTGAACGAGAATGTTCCACCGTTACAGATCGAGTTGGATGATGCGAGAGGACGATATCTTCAATCAACGACGATGAGTCCAGGTTTTCAATCGTACGCCGAGAACGACTTCGGTTCGCCGCCGCTTGCACGATACTTCTACGCCGGCTCTCCGCTTTCCGGTAAATCCAGTGACTCCTTCAACTCTCCGCTTTTCGGCGCGAGCAAGTATAGGTCTACAAAAATGCAGCAGTACTCCGGCGGCGGCACTAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTATCTCTCTCGCCGCTTTCTTCGATTGAGAACTTTGAGATAAAGTCACCGCCGATGTACAGAACACCGGTGAAAGGTGACGAGGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAAAGTCCGGAGGAAAGAGCGGAAGATCATCATCTTCTTCTTCTTCCGGTAGAGGCTCCTCTTCCTCTTCCTCCTCGTCGTCGAGGAAGAGTGTGTTTAAGACTGATCTTTGCAGAGCGTGGGAAGATTCTGGAAACTGTCGCTATAACTCCAAATGCCAGTTTATCCACGGAAGAGAGGAGCTCCATCCAAGTCGTCTCAGCATGAAGGGTAAATCTGAGGCACAGATGGGCAGACAATCTGCTAAACCAGGACCCTGGACATATAGCCCAAATAGCCGCGCTGTTAACAAACCTGCTGAAGTAGCTGAAGCTGAACATGCAGTCAGAAGACTCATAATTTCCCAACCAGCTTCACCTGAACCTCATTGTTCCCCTGCCAATTCCAACACCAGTAGTGATTGGTCACCAGTGGATGACGGCATTGAAGTTGTCCTCCCAAATGTTTCGGAGAGAGATCCATCTAGGGAGGAAGTTGAAGCACACATTTTGGGTATTCTCAATCAGCGGACTACTAAAAGGAGACTACCAGTTTTTGCTGCAATTTGCAAGGGGCAGTAA 972 0.4897 MRTLNENVPPLQIELDDARGRYLQSTTMSPGFQSYAENDFGSPPLARYFYAGSPLSGKSSDSFNSPLFGASKYRSTKMQQYSGGGTSSGNSSFGSRGRLSLSPLSSIENFEIKSPPMYRTPVKGDEEVIVMDDIQVRPKSGGKSGRSSSSSSSGRGSSSSSSSSSRKSVFKTDLCRAWEDSGNCRYNSKCQFIHGREELHPSRLSMKGKSEAQMGRQSAKPGPWTYSPNSRAVNKPAEVAEAEHAVRRLIISQPASPEPHCSPANSNTSSDWSPVDDGIEVVLPNVSERDPSREEVEAHILGILNQRTTKRRLPVFAAICKGQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04049 323 MobiDBLite consensus disorder prediction 201 229 - -
Trre7g04049 323 MobiDBLite consensus disorder prediction 258 274 - -
Trre7g04049 323 SUPERFAMILY CCCH zinc finger 168 200 IPR036855 GO:0046872
Trre7g04049 323 Gene3D - 161 202 - -
Trre7g04049 323 ProSiteProfiles Zinc finger C3H1-type profile. 170 197 IPR000571 GO:0046872
Trre7g04049 323 FunFam zinc finger CCCH domain-containing protein 15-like 163 202 - -
Trre7g04049 323 MobiDBLite consensus disorder prediction 78 97 - -
Trre7g04049 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 170 196 IPR000571 GO:0046872
Trre7g04049 323 PANTHER CCCH ZINC FINGER/TIS11-RELATED 53 205 IPR045877 GO:0003729
Trre7g04049 323 MobiDBLite consensus disorder prediction 134 166 - -
Trre7g04049 323 SMART c3hfinal6 169 196 IPR000571 GO:0046872
Trre7g04049 323 MobiDBLite consensus disorder prediction 141 166 - -
Trre7g04049 323 MobiDBLite consensus disorder prediction 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04049 Trre-Chr7 48713180 48717456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04049 171 201 C3H Transcription Factor Family AT1G68200 51.613 8.06e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g04049 zf-CCCH 6.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04049 - K18753 gmx:102665928 259.225