Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04048 ATGGAATACGCTATGAGCAACGGCAAGAGGAAGGTTTCGAAGATGAGGACTTTGAACGAGAATGTTCCACCGTTACAGATCGAGTTGGATGATGCGAGAGGACGATATCTTCAATCAACGACGATGAGTCCAGGTTTTCAATCGTACGCCGAGAACGACTTCGGTTCGCCGCCGCTTGCACGATACTTCTACGCCGGCTCTCCGCTTTCCGGTAAATCCAGTGACTCCTTCAACTCTCCGCTTTTCGGCGCGAGCAAGTATAGGTCTACAAAAATGCAGCAGTACTCCGGCGGCGGCACTAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTATCTCTCTCGCCGCTTTCTTCGATTGAGAACTTTGAGATAAAGTCACCGCCGATGTACAGAACACCGGTGAAAGGTGACGAGGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAAAGTCCGGAGGAAAGAGCGGAAGATCATCATCTTCTTCTTCTTCCGGTAGAGGCTCCTCTTCCTCTTCCTCCTCGTCGTCGAGGAAGAGTGTGTTTAAGACTGATCTTTGCAGAGCGTGGGAAGATTCTGGAAACTGTCGCTATAACTCCAAATGCCAGTTTATCCACGGAAGAGAGGAGCTCCATCCAAGTCGTCTCAGCATGAAGGGTAAATCTGAGGCACAGATGGGCAGACAATCTGCTAAACCAGGACCCTGGACATATAGCCCAAATAGCCGCGCTGTTAACAAACCTGCTGAAGTAGCTGAAGCTGAACATGCAGTCAGAAGACTCATAATTTCCCAACCAGCTTCACCTGAACCTCATTGTTCCCCTGCCAATTCCAACACCAGTAGTGATTGGTCACCAGTGGATGACGGCATTGAAGTTGTCCTCCCAAATGTTTCGGAGAGAGATCCATCTAGGGAGGAAGTTGAAGCACACATTTTGGGTATTCTCAATCAGCGGACTACTAAAAGGAGACTACCAGTTTTTGCTGCAATTTGCAAGGGGCAGTAA 1014 0.4892 MEYAMSNGKRKVSKMRTLNENVPPLQIELDDARGRYLQSTTMSPGFQSYAENDFGSPPLARYFYAGSPLSGKSSDSFNSPLFGASKYRSTKMQQYSGGGTSSGNSSFGSRGRLSLSPLSSIENFEIKSPPMYRTPVKGDEEVIVMDDIQVRPKSGGKSGRSSSSSSSGRGSSSSSSSSSRKSVFKTDLCRAWEDSGNCRYNSKCQFIHGREELHPSRLSMKGKSEAQMGRQSAKPGPWTYSPNSRAVNKPAEVAEAEHAVRRLIISQPASPEPHCSPANSNTSSDWSPVDDGIEVVLPNVSERDPSREEVEAHILGILNQRTTKRRLPVFAAICKGQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04048 337 Gene3D - 175 216 - -
Trre7g04048 337 MobiDBLite consensus disorder prediction 148 180 - -
Trre7g04048 337 SUPERFAMILY CCCH zinc finger 182 214 IPR036855 GO:0046872
Trre7g04048 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 210 IPR000571 GO:0046872
Trre7g04048 337 MobiDBLite consensus disorder prediction 155 180 - -
Trre7g04048 337 MobiDBLite consensus disorder prediction 264 292 - -
Trre7g04048 337 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 218 IPR045877 GO:0003729
Trre7g04048 337 MobiDBLite consensus disorder prediction 272 288 - -
Trre7g04048 337 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Trre7g04048 337 MobiDBLite consensus disorder prediction 215 243 - -
Trre7g04048 337 FunFam zinc finger CCCH domain-containing protein 15-like 177 216 - -
Trre7g04048 337 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Trre7g04048 337 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04048 Trre-Chr7 48713138 48717456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04048 185 215 C3H Transcription Factor Family AT1G68200 51.613 7.60e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g04048 zf-CCCH 7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04048 - K18753 gmx:102665928 264.618