Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04023 ATGGATTCTGCGTTATCCGTCACCACAACGGCGCAGATTCTACTCTTCAGAGCACTCCACCGTCATTTCTCCGGTGCACCTTCTCCTTCGCTTCTCCGTCGCCGCAACTTCAAATACGCTGTTACTTCATACAATAACCGTTTTGGCATTCCGTGTTCTTCCACCTCTTACACTTCTGTGCCGTTATCGCCCTCGCTCCGTAACTTCCACGCATTTCTTTCACGAAATTCATGCCGCACGCGCTGCGTTTCGAGCTCTGCTGCTTCTTTTGGTTCTTCTGCCGGTGGTGGAAATGGTGGTGCTGGAGTTGGAAATGGCGGAGGTGGTGGTGGTGGTTCTGGTGGTGAGTCTGGTGATGTTAGAATCAATTTGGTTGGAGATGCGGCTCAAGAGCTTTCATCTCTTTCGCCTGATGTTATCATTCTTGATGTTTCGGGAATGGTATGTGGGGGATGTGCAGCATCTGTGAAAAGGATTCTGGAAAGTCAACCACAAGTGTCATCTGCTAGTGTAAATTTAACAACAGAGACAGTAATAGTTTGGCCTGTATCCGAAGCAAAAGCTGCACCAAATTGGCAAAAGCAATTAGGGAAGACACTTGCAGAACATTTAACTAGCTGTGGTTTCAATTCTTGCCTTCGAGATTCAACAAGAGAAAATTTCCTACAAATTTTTGAAAGAAAGATGGAGGAAAGAAATAGACAATTAAAAGAAAGTGGTCGTGAGCTAGCTGTTTCCTGGGCTCTTTGTGCTGTGTGTCTTGTTGGCCATCTCTCCCATCTCTTTGCAGCAAAGGCACCATGGATCCATGCATTTCATTCTGTCGGGTTTCATATATCCTTGTGTTTGCTTACATTACTTGGCCCCGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTTTTAAAAGGGCGCCAAACATGAACAGCTTAGTTGGTCTTGGGGCTTTGTCATCATTCACAGTCAGTTCATTTGCTGTTTTGCTGCCGAAATTGGGTTGGAAGGCATTTTTTGAGGAACCTATTATGCTGATTGCATTTGTCTTGTTGGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGCATATTGCCATCTAAAGCTCGCCTTCTAGTTAATAACGGGGAAACAAATGCTGCCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCCGTTGAAGACAAAATTATCATATTACCCGGAGATCGTATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGTAGTGTAGATGAGTCAAGTTTCACCGGGGAGCCGCTGCCAGTAACCAAAGAACTTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAATAGAGGTGCGGAGACCAGGGGGTGAGACTGCTATAGGAGACATTATTCGTCTAGTTGAAGAGGCACAAAGTAGAGAAGCTCCTGTACAACGGTTGGCTGACAAGGTAGCAGGATACTTCACGTATGGAGTAATGGCAATCTCTGTTAGCACATTTACATTTTGGAGTGTGCTTGGCCCACAGATTTTACCTGCTGCTGTATACCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCATGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGAGCTAAAAGAGGATTACTTTTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAATACTGTTGTGTTCGACAAAACAGGGACCCTCACGATTGGTAAACCTGTTGTGACAAAGATTGTCACTCCCACCAACATAGAAAATGCAAATTCAAGCCAAACTAAAATAAATGCTTTGTCTGATATTGAAGTTCTGAGGTTAGCAGCTGCTGTAGAATCAAACTCAGTACATCCAGTTGGGAAAGCAATTGTGGATGCCGCTCAGGCAGTTAATTGTCATGACGCTAAGGTAACAGATGAAACATTCCTGGAAGAACCTGGATCTGGTGTTGTTGCAACCGTAAATAACAAAAAGGTTTCCGTTGGGACATTGGAATGGATAACCAGGCATGGAGTTAACAACAGTATACATCAAGAAGTGGAGTCTAAAAACCAATCCTTTGTCTATGTTGGAGTTGATGATACTTTGGCTGGCCAGATTTATTTTGAAGATGAGATAAGGAAAGATGCAAGACATGTTGTTGACACGTTATCTAAGCAAGGTATTGATGTCTACATGCTGTCTGGAGACAAAAGGAATGCAGCTGAATATGTTGCATCTCTTGTTGGGATTCCCAAAGCAAAGGTGCTATCTGAAGTGAAACCAGAGGAGAAGAACAAGTTCATAAAGGAACTTCAGAAAGATAAGAAAGTTGTAGCTATGGTTGGTGATGGAATCAACGATGCAGCTGCCCTGGCTTCTTCGCATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCCAGTGAGGTGTCTTCCATTGTATTAATGCACAACCATCTCTCACAGCTGCTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAGCAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGGATTCCAATTGCAGCCGGGGCGTTATTTCCTGTAAATGGTACCATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGTTGAGCTCCATTGGCGTAATGAGTAACTCATTACTTTTGAGATTCAAGTTTTCCTTAAAGCAACAACAAATACATGGCACGTTGCCAAAGACCAAAACCTATGTTGAATCTGATCTGGCTCGTGGAAACAAGAAAATGAAGTATTCAAATTAG 2841 0.4375 MDSALSVTTTAQILLFRALHRHFSGAPSPSLLRRRNFKYAVTSYNNRFGIPCSSTSYTSVPLSPSLRNFHAFLSRNSCRTRCVSSSAASFGSSAGGGNGGAGVGNGGGGGGGSGGESGDVRINLVGDAAQELSSLSPDVIILDVSGMVCGGCAASVKRILESQPQVSSASVNLTTETVIVWPVSEAKAAPNWQKQLGKTLAEHLTSCGFNSCLRDSTRENFLQIFERKMEERNRQLKESGRELAVSWALCAVCLVGHLSHLFAAKAPWIHAFHSVGFHISLCLLTLLGPGRQLILDGLKSLFKRAPNMNSLVGLGALSSFTVSSFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVNNGETNAASVVEVPSDSLSVEDKIIILPGDRIPADGIVRAGRSSVDESSFTGEPLPVTKELGSEVAAGSINLNGTLTIEVRRPGGETAIGDIIRLVEEAQSREAPVQRLADKVAGYFTYGVMAISVSTFTFWSVLGPQILPAAVYQGSAVSLALQLACSVLVIACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGKPVVTKIVTPTNIENANSSQTKINALSDIEVLRLAAAVESNSVHPVGKAIVDAAQAVNCHDAKVTDETFLEEPGSGVVATVNNKKVSVGTLEWITRHGVNNSIHQEVESKNQSFVYVGVDDTLAGQIYFEDEIRKDARHVVDTLSKQGIDVYMLSGDKRNAAEYVASLVGIPKAKVLSEVKPEEKNKFIKELQKDKKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQLLDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGALFPVNGTMLTPSIAGALMGLSSIGVMSNSLLLRFKFSLKQQQIHGTLPKTKTYVESDLARGNKKMKYSN 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04023 946 Gene3D - 139 215 - -
Trre7g04023 946 ProSitePatterns E1-E2 ATPases phosphorylation site. 590 596 IPR018303 -
Trre7g04023 946 SFLD p-type atpase 571 850 IPR044492 -
Trre7g04023 946 CDD P-type_ATPase_HM 243 908 - -
Trre7g04023 946 Pfam Heavy-metal-associated domain 142 203 IPR006121 GO:0046872
Trre7g04023 946 ProSitePatterns Heavy-metal-associated domain. 144 173 IPR017969 GO:0046872
Trre7g04023 946 SUPERFAMILY HAD-like 586 906 IPR036412 -
Trre7g04023 946 CDD HMA 142 198 IPR006121 GO:0046872
Trre7g04023 946 SFLD Haloacid Dehalogenase 571 850 - -
Trre7g04023 946 SUPERFAMILY Calcium ATPase, transduction domain A 390 477 IPR008250 -
Trre7g04023 946 Gene3D - 358 481 - -
Trre7g04023 946 FunFam Copper-transporting ATPase 1, putative 359 481 - -
Trre7g04023 946 FunFam Copper-transporting ATPase PAA1, chloroplastic 138 213 - -
Trre7g04023 946 Pfam E1-E2 ATPase 372 568 - -
Trre7g04023 946 Gene3D - 579 850 IPR023214 -
Trre7g04023 946 FunFam Copper-transporting ATPase PAA1 chloroplastic 599 731 - -
Trre7g04023 946 Pfam haloacid dehalogenase-like hydrolase 584 812 - -
Trre7g04023 946 Coils Coil 222 242 - -
Trre7g04023 946 PRINTS P-type cation-transporting ATPase superfamily signature 800 819 - -
Trre7g04023 946 PRINTS P-type cation-transporting ATPase superfamily signature 745 755 - -
Trre7g04023 946 PRINTS P-type cation-transporting ATPase superfamily signature 588 602 - -
Trre7g04023 946 PRINTS P-type cation-transporting ATPase superfamily signature 427 441 - -
Trre7g04023 946 PRINTS P-type cation-transporting ATPase superfamily signature 823 835 - -
Trre7g04023 946 Gene3D - 599 731 IPR023299 GO:0000166
Trre7g04023 946 FunFam Copper-transporting ATPase PAA1 chloroplastic 716 867 - -
Trre7g04023 946 NCBIfam HAD-IC family P-type ATPase 347 616 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre7g04023 946 NCBIfam HAD-IC family P-type ATPase 633 879 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre7g04023 946 ProSiteProfiles Heavy-metal-associated domain profile. 138 205 IPR006121 GO:0046872
Trre7g04023 946 SUPERFAMILY Calcium ATPase, transmembrane domain M 342 888 IPR023298 -
Trre7g04023 946 PRINTS Copper-transporting ATPase signature 777 794 - -
Trre7g04023 946 PRINTS Copper-transporting ATPase signature 341 360 - -
Trre7g04023 946 PRINTS Copper-transporting ATPase signature 293 312 - -
Trre7g04023 946 PRINTS Copper-transporting ATPase signature 571 586 - -
Trre7g04023 946 SUPERFAMILY HMA, heavy metal-associated domain 140 183 IPR036163 GO:0046872
Trre7g04023 946 NCBIfam heavy metal translocating P-type ATPase 308 909 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre7g04023 946 NCBIfam copper-translocating P-type ATPase 290 910 - -
Trre7g04023 946 PANTHER ATP7, ISOFORM B 133 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04023 Trre-Chr7 48517429 48530536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04023 299 910 Primary Pumps ATPases AT1G63440 39.683 2.12e-124 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04023 K17686 - gmx:100796210 1431.77