Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04020 ATGGCGGACCCTCCTCCTTCTCGCCAATTGCCTACTCGACCAGATTTTCAGCAGTTACAATTTGAAGCCCAGCATCGGTGGTTACGCCCTGCAGAAATATTGGAAATTCTTCGTAATTATCAGATGTTTCAAATCACACCTGAACCGCCTAGCAGGCCACCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAACTGGAGAAAAAAGAGAGACGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGCTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATATTGGTGCAAGCACAGATACTAAAGGGGTAACATCAGATTCCCAAAACGCCAGTTCTGTGTCATCTGGCTTTCCTGCAAATTACGCTAACATGCCTTCGGGAAGTGCGGATTCCATGAGCCCAACAAGCACTTTAACTTCTTTATGTGAAGATGCAGATTCAGAGGATATTCATCAAGCAAGCTCGGGATTTCACACTTTCCGTGAGTCACAAAATCTGGGGAATGGTCCACTTATGGATAAGGTTGATGCTCGTTCAAATAGTTCATATCTTACACATCCCTTTTCAGGTGATCATGGTCAGTTATCGTTTTCAGGACCAAATTACCTCCCACTTGTTCAGGGGGTTAAATCCAATCAAAGTGATGCTACATATGCCGAGGGTCAGAGAGCACTCAACATAGCATCCTGGGACAATGTCATGGAGAAATCTGCAGGATTGCATACTGATCCCTCCCTTGTATCACCTAATTCTATTCCATCGAGTTCAATGGGCAACATCCTTGAACAAGATTATTCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCGTTGAATTTGGAATTTGAATCTGATTATTCCACTGAGCTACTGGGAAAAGAAACTACTAATGCAAGTTCAGAAATTGGTCCTGACCTATTTTGTTTTAATTTTGAGCCAAAAGAGCAGCCTGTGCAGCAAAACTTGCCAATGGAGCATACACCTGCACAATCTCAGGATGCACTGAAATCTGAGTGTGGAATTCATGGTGAACACAGTGCCAATTATTCCTTGAACATGAAGCATGCTTTTATGGAGGCTGAAGAGAGCCTGAAGAAGGTCGATAGCTTCTCTAGGTGGATTTCTAAAGAACTTGCAGCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATATCATGGGGCACGGATGAAAGTGGGAATGTGATAGATGATACCTCATTGAACCCGTCCCTATCTCAAGACCAGCTGTTTAGCATACATGATTTTTCACCTAAATGGGCTTATGCTGGATCAGAAATTGAGGTGTTGATTATTGGAACATTTTTGAAGAGTAAACCAGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCAGCTACGGTTTTAGCTAATGGAATTCTGTCCTGTCAAGCTCCACCGCATGAGATTGGACGGATCCCTTTCTATGTAACCTTTTCCAATAGATTTGCTTGTAGTGAAGTTCGGGAATTTGAGTTCAAAGAGGGCTTTACTAGGAATGTGGATCTGGCAGATTTTTTTAACAGCTCAACTGAAATGATGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATGTGGAGAAAAGAAACTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCGAGTAATGAAGAGCCAACTGGAGAGATGAATATATCAAAACACAGGTTGGAGGTGCATATATTTCACAGGCAGGTTAAGGAGAAGCTGTACTCGTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCATGTGTTTGATAAAAATGGGCAATGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGTACAGCTCTACATTGGGCTGCATCCTGTGACAGGGAGCGAACGGTTGTTCTCCTTGTCTCCATGGGTGCCGCTGCTGGAGCATTGACTGATCCATGTCCAGAATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTATGGCCACAAAGGAATTTCGGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGATGATGTGAATAAAGATGGTGCAAAAGAAACTTTGGGAATGAAAGCAGTACAGACGATTTCAGAACGAGTTGCGACACCTGTGTTTAGTGGTGATTTACCAGATGCTATCTGCCTTAAGGACTCTCTCGATGCTGTCCGTAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAACAGTTAGCTGAGTATGAAGGCGATGATGAGTTTGGATTGTCAGATCAGCATGCTCTTTCACTTCTACCCTCTAAGGCATGCAAATCTGGTCATGGGGATGGTTCAGTCAATGCTGCTGCAATACAAATACAGAAAAAATTCCGTGGCTGGACAAAGAGAAAAGAATTCCTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAAGTAAGAAAGAAGTATAAATCATTCATGTGGTCCGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGGGGTTTACGTGGATTTCGACCAGATGCTGTTAATAAGGCCCCCAACCAACCAAGTAACGATCCTGTGAAGGAGGATGACGATTATGATTTTCTCAAGGAAGGGAGGAAACAGAGTGAAGAAAAGTTCCAAAAGGCCCTTTCAAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCCCGGGCCCAGTACAGGCGACTGCTAAATGCAGTAGACGATTTCCGTCAAACCAAGGCATCTAATTTGAGTCCGATAAGTTCGGAAGAGGCGGTCGATGGTGTGGAGGATTTGATTGATATCGACATGCTTTTAGATGATGATAATTTCTTACCTATTGTATTCGATTGA 3243 0.4271 MADPPPSRQLPTRPDFQQLQFEAQHRWLRPAEILEILRNYQMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGASTDTKGVTSDSQNASSVSSGFPANYANMPSGSADSMSPTSTLTSLCEDADSEDIHQASSGFHTFRESQNLGNGPLMDKVDARSNSSYLTHPFSGDHGQLSFSGPNYLPLVQGVKSNQSDATYAEGQRALNIASWDNVMEKSAGLHTDPSLVSPNSIPSSSMGNILEQDYSVFTEGRASQSLQSNWQIPFEDNTGEFPKWSFTQSLNLEFESDYSTELLGKETTNASSEIGPDLFCFNFEPKEQPVQQNLPMEHTPAQSQDALKSECGIHGEHSANYSLNMKHAFMEAEESLKKVDSFSRWISKELAAVDDLHMQSSPGISWGTDESGNVIDDTSLNPSLSQDQLFSIHDFSPKWAYAGSEIEVLIIGTFLKSKPEVATCNWSCMFGEVEVPATVLANGILSCQAPPHEIGRIPFYVTFSNRFACSEVREFEFKEGFTRNVDLADFFNSSTEMMLHLQLEELLTLNSVHLSDQVFEDDVEKRNLILKLISLKEEEEYSSNEEPTGEMNISKHRLEVHIFHRQVKEKLYSWLLHKVTETGKGPHVFDKNGQCVLHLVAALGYDWAIAPIVTSGVNINFRDVNGCTALHWAASCDRERTVVLLVSMGAAAGALTDPCPEFPSGRTPADLASSYGHKGISGFLAESLLTSHLESLTVDDVNKDGAKETLGMKAVQTISERVATPVFSGDLPDAICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAEYEGDDEFGLSDQHALSLLPSKACKSGHGDGSVNAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKSFMWSVGILEKVVLRWRRKGRGLRGFRPDAVNKAPNQPSNDPVKEDDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNAVDDFRQTKASNLSPISSEEAVDGVEDLIDIDMLLDDDNFLPIVFD 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04020 1080 FunFam Calmodulin-binding transcription activator 2 901 949 - -
Trre7g04020 1080 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 1042 - -
Trre7g04020 1080 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Trre7g04020 1080 ProSiteProfiles IQ motif profile. 903 931 IPR000048 GO:0005515
Trre7g04020 1080 FunFam Calmodulin-binding transcription activator 2 485 581 - -
Trre7g04020 1080 MobiDBLite consensus disorder prediction 973 992 - -
Trre7g04020 1080 SMART CG_1_2 19 137 IPR005559 GO:0003677
Trre7g04020 1080 SUPERFAMILY Ankyrin repeat 680 786 IPR036770 -
Trre7g04020 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 952 IPR027417 -
Trre7g04020 1080 Pfam IQ calmodulin-binding motif 927 946 IPR000048 GO:0005515
Trre7g04020 1080 Pfam IQ calmodulin-binding motif 904 922 IPR000048 GO:0005515
Trre7g04020 1080 SMART ANK_2a 764 793 IPR002110 GO:0005515
Trre7g04020 1080 SMART ANK_2a 725 754 IPR002110 GO:0005515
Trre7g04020 1080 Gene3D - 901 949 - -
Trre7g04020 1080 Gene3D - 660 792 IPR036770 -
Trre7g04020 1080 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Trre7g04020 1080 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Trre7g04020 1080 SUPERFAMILY E set domains 492 577 IPR014756 -
Trre7g04020 1080 ProSiteProfiles IQ motif profile. 925 949 IPR000048 GO:0005515
Trre7g04020 1080 SMART iq_5 901 923 IPR000048 GO:0005515
Trre7g04020 1080 SMART iq_5 924 946 IPR000048 GO:0005515
Trre7g04020 1080 Gene3D Immunoglobulins 485 580 IPR013783 -
Trre7g04020 1080 Pfam IPT/TIG domain 492 565 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04020 Trre-Chr7 48490861 48497967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04020 13 1061 CAMTA Transcription Factor Family AT5G64220 51.263 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre7g04020 CG-1 6.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04020 K21596 - gmx:100795682 1588.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04020 7 48490861 48497967 Trre3g00207 3 1393102 1404119 PCT