Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04019 ATGGCGGACCCTCCTCCTTCTCGCCAATTGCCTACTCGACCAGATTTTCAGCAGTTACAATTTGAAGCCCAGCATCGGTGGTTACGCCCTGCAGAAATATTGGAAATTCTTCGTAATTATCAGATGTTTCAAATCACACCTGAACCGCCTAGCAGGCCACCGAGTGGATCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACACAACTGGAGAAAAAAGAGAGACGGAAAAACTGTGAGGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGCTACACTGCTACTATGCCCATGGAGAAGAGAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATATTGGTGCAAGCACAGATACTAAAGGGGTAACATCAGATTCCCAAAACGCCAGTTCTGTGTCATCTGGCTTTCCTGCAAATTACGCTAACATGCCTTCGGGAAGTGCGGATTCCATGAGCCCAACAAGCACTTTAACTTCTTTATGTGAAGATGCAGATTCAGAGGATATTCATCAAGCAAGCTCGGGATTTCACACTTTCCGTGAGTCACAAAATCTGGGGAATGGTCCACTTATGGATAAGGTTGATGCTCGTTCAAATAGTTCATATCTTACACATCCCTTTTCAGGACCAAATTACCTCCCACTTGTTCAGGGGGTTAAATCCAATCAAAGTGATGCTACATATGCCGAGGGTCAGAGAGCACTCAACATAGCATCCTGGGACAATGTCATGGAGAAATCTGCAGGATTGCATACTGATCCCTCCCTTGTATCACCTAATTCTATTCCATCGAGTTCAATGGGCAACATCCTTGAACAAGATTATTCTGTCTTTACTGAAGGAAGGGCCTCACAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTTCCTAAATGGAGCTTTACTCAATCGTTGAATTTGGAATTTGAATCTGATTATTCCACTGAGCTACTGGGAAAAGAAACTACTAATGCAAGTTCAGAAATTGGTCCTGACCTATTTTGTTTTAATTTTGAGCCAAAAGAGCAGCCTGTGCAGCAAAACTTGCCAATGGAGCATACACCTGCACAATCTCAGGATGCACTGAAATCTGAGTGTGGAATTCATGGTGAACACAGTGCCAATTATTCCTTGAACATGAAGCATGCTTTTATGGAGGCTGAAGAGAGCCTGAAGAAGGTCGATAGCTTCTCTAGGTGGATTTCTAAAGAACTTGCAGCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATATCATGGGGCACGGATGAAAGTGGGAATGTGATAGATGATACCTCATTGAACCCGTCCCTATCTCAAGACCAGCTGTTTAGCATACATGATTTTTCACCTAAATGGGCTTATGCTGGATCAGAAATTGAGGTGTTGATTATTGGAACATTTTTGAAGAGTAAACCAGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCAGCTACGGTTTTAGCTAATGGAATTCTGTCCTGTCAAGCTCCACCGCATGAGATTGGACGGATCCCTTTCTATGTAACCTTTTCCAATAGATTTGCTTGTAGTGAAGTTCGGGAATTTGAGTTCAAAGAGGGCTTTACTAGGAATGTGGATCTGGCAGATTTTTTTAACAGCTCAACTGAAATGATGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATGTGGAGAAAAGAAACTTGATTCTTAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCGAGTAATGAAGAGCCAACTGGAGAGATGAATATATCAAAACACAGGTTGGAGGTGCATATATTTCACAGGCAGGTTAAGGAGAAGCTGTACTCGTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCATGTGTTTGATAAAAATGGGCAATGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGTACAGCTCTACATTGGGCTGCATCCTGTGACAGGGAGCGAACGGTTGTTCTCCTTGTCTCCATGGGTGCCGCTGCTGGAGCATTGACTGATCCATGTCCAGAATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCTATGGCCACAAAGGAATTTCGGGTTTTCTTGCCGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGATGATGTGAATAAAGATGGTGCAAAAGAAACTTTGGGAATGAAAGCAGTACAGACGATTTCAGAACGAGTTGCGACACCTGTGTTTAGTGGTGATTTACCAGATGCTATCTGCCTTAAGGACTCTCTCGATGCTGTCCGTAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAACAGTTAGCTGAGTATGAAGGCGATGATGAGTTTGGATTGTCAGATCAGCATGCTCTTTCACTTCTACCCTCTAAGGCATGCAAATCTGGTCATGGGGATGGTTCAGTCAATGCTGCTGCAATACAAATACAGAAAAAATTCCGTGGCTGGACAAAGAGAAAAGAATTCCTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAAGTAAGAAAGAAGTATAAATCATTCATGTGGTCCGTGGGAATCCTGGAGAAGGTTGTATTACGGTGGAGGCGTAAGGGCAGGGGTTTACGTGGATTTCGACCAGATGCTGTTAATAAGGCCCCCAACCAACCAAGTAACGATCCTGTGAAGGAGGATGACGATTATGATTTTCTCAAGGAAGGGAGGAAACAGAGTGAAGAAAAGTTCCAAAAGGCCCTTTCAAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCCCGGGCCCAGTACAGGCGACTGCTAAATGCAGTAGACGATTTCCGTCAAACCAAGGCATCTAATTTGAGTCCGATAAGTTCGGAAGAGGCGGTCGATGGTGTGGAGGATTTGATTGATATCGACATGCTTTTAGATGATGATAATTTCTTACCTATTGTATTCGATTGA 3216 0.4272 MADPPPSRQLPTRPDFQQLQFEAQHRWLRPAEILEILRNYQMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGASTDTKGVTSDSQNASSVSSGFPANYANMPSGSADSMSPTSTLTSLCEDADSEDIHQASSGFHTFRESQNLGNGPLMDKVDARSNSSYLTHPFSGPNYLPLVQGVKSNQSDATYAEGQRALNIASWDNVMEKSAGLHTDPSLVSPNSIPSSSMGNILEQDYSVFTEGRASQSLQSNWQIPFEDNTGEFPKWSFTQSLNLEFESDYSTELLGKETTNASSEIGPDLFCFNFEPKEQPVQQNLPMEHTPAQSQDALKSECGIHGEHSANYSLNMKHAFMEAEESLKKVDSFSRWISKELAAVDDLHMQSSPGISWGTDESGNVIDDTSLNPSLSQDQLFSIHDFSPKWAYAGSEIEVLIIGTFLKSKPEVATCNWSCMFGEVEVPATVLANGILSCQAPPHEIGRIPFYVTFSNRFACSEVREFEFKEGFTRNVDLADFFNSSTEMMLHLQLEELLTLNSVHLSDQVFEDDVEKRNLILKLISLKEEEEYSSNEEPTGEMNISKHRLEVHIFHRQVKEKLYSWLLHKVTETGKGPHVFDKNGQCVLHLVAALGYDWAIAPIVTSGVNINFRDVNGCTALHWAASCDRERTVVLLVSMGAAAGALTDPCPEFPSGRTPADLASSYGHKGISGFLAESLLTSHLESLTVDDVNKDGAKETLGMKAVQTISERVATPVFSGDLPDAICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAEYEGDDEFGLSDQHALSLLPSKACKSGHGDGSVNAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKSFMWSVGILEKVVLRWRRKGRGLRGFRPDAVNKAPNQPSNDPVKEDDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNAVDDFRQTKASNLSPISSEEAVDGVEDLIDIDMLLDDDNFLPIVFD 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04019 1071 SMART ANK_2a 716 745 IPR002110 GO:0005515
Trre7g04019 1071 SMART ANK_2a 755 784 IPR002110 GO:0005515
Trre7g04019 1071 FunFam Calmodulin-binding transcription activator 2 476 572 - -
Trre7g04019 1071 SMART iq_5 915 937 IPR000048 GO:0005515
Trre7g04019 1071 SMART iq_5 892 914 IPR000048 GO:0005515
Trre7g04019 1071 Pfam IQ calmodulin-binding motif 895 913 IPR000048 GO:0005515
Trre7g04019 1071 Pfam IQ calmodulin-binding motif 918 937 IPR000048 GO:0005515
Trre7g04019 1071 SUPERFAMILY E set domains 483 568 IPR014756 -
Trre7g04019 1071 ProSiteProfiles IQ motif profile. 916 940 IPR000048 GO:0005515
Trre7g04019 1071 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 1033 - -
Trre7g04019 1071 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Trre7g04019 1071 SMART CG_1_2 19 137 IPR005559 GO:0003677
Trre7g04019 1071 Gene3D - 892 940 - -
Trre7g04019 1071 Gene3D - 651 783 IPR036770 -
Trre7g04019 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 943 IPR027417 -
Trre7g04019 1071 ProSiteProfiles IQ motif profile. 894 922 IPR000048 GO:0005515
Trre7g04019 1071 Gene3D Immunoglobulins 476 571 IPR013783 -
Trre7g04019 1071 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Trre7g04019 1071 SUPERFAMILY Ankyrin repeat 671 777 IPR036770 -
Trre7g04019 1071 MobiDBLite consensus disorder prediction 964 983 - -
Trre7g04019 1071 FunFam Calmodulin-binding transcription activator 2 892 940 - -
Trre7g04019 1071 Pfam IPT/TIG domain 483 556 IPR002909 -
Trre7g04019 1071 ProSiteProfiles Ankyrin repeat profile. 716 748 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04019 Trre-Chr7 48490861 48497967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04019 13 1052 CAMTA Transcription Factor Family AT5G64220 51.311 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre7g04019 CG-1 6.4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04019 K21596 - gmx:100795682 1567.36