Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04010 ATGGAAAACGATGACATTGATATGCTCGGCGCCGATAACAACGAAGCCGATTTGGATGACATGAAGAAGCGGCTGAAGGAAATGGAAGATGAAGCTGCTGCTTTGCGGGAAATGCAAGCAAAGGTTGAGAAAGAGATGGGATCTGTCCAAGATCCCGCTAATGCTTCTGCAAGTCAGATTAATAGGGAGGAATTAGATTCTCGATCAATCTTTGTGGGCAATGTTGACTATGCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGAACAGTAAACCGAGTGACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAATTCGTTGAAGTTGAAGCTGTTCAAGAGGCTCTTTTGCTGAATGAATCTGAACTGCATGGACGTCAATTGAAGGTAACTGCTAAAAGGACCAATGTACCTGGGATGAAGCAATTTCGTCCCCGCCGGCCTAGTAATCCTTACATGGGATTTCGAGGCAGAACTCCATATGCACCTCCTTTTGCCTATGCCCCTGCTCCTTATGGATATGGCAAGGTTCCAAGGTTCAGAATGGGGATGCGCTACAGTCCCTACTATTGA 600 0.4583 MENDDIDMLGADNNEADLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANASASQINREELDSRSIFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKVPRFRMGMRYSPYY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04010 199 Gene3D - 7 141 IPR012677 -
Trre7g04010 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 163 - -
Trre7g04010 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Trre7g04010 199 CDD RRM_II_PABPs 69 140 - -
Trre7g04010 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Trre7g04010 199 SMART rrm1_1 69 140 IPR000504 GO:0003723
Trre7g04010 199 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Trre7g04010 199 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04010 Trre-Chr7 48397156 48401972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04010 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 1.43e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04010 K14396 - gmx:100784473 324.324