Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04003 ATGACTTCCCTTATTTCAGCTGTCCCTAATATTGTAGAGATTGAACCAACTAGAGATATTGCTCCAAAAAGGATGAGTAATGGAGGAGAAGAGAAGGGAATTTGTTTGACATGGAAGGATCTATGGGTGACAGTTGATTCTTCTTCTTCTTCCAAAGGAAAGATGAAAGAAAGCAAATCAATTCTTGATGGTCTAACTGGTTATGCAAAACCAGGTCAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAGCTTCTAACACAAGACAATCAGGGGAGATTCTGATCAATGGCAACAAACAAGCATTGGCTTATGGAACCTCGGCATATGTGACACAAGATGATACATTATTAACAACTTTAACCGTTAAAGAAGCAGTATACTATTCAGCTCAACTTCAATTACCAGACACAATGTCAAAGGAAGAGAAGAAAGAGAGAGCTGATTTTACAATAAAAGAAATGGGCCTACAAGATGCAATTAACACAAGAATTGGAGGGTGGGGTGTAAAAGGAATAAGTGGGGGTCAAAAAAGAAGAGTCAGCATTAGCATTGAGATTCTAACACGTCCAAGACTTCTCTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTCATGAAAAGAATAGCTTCTTTGGATAAAAAAGATGGAATTCAAAGGACTATTATTGCTTCAATCCATCAACCTAGTATTGAAGTTTTTCAACTTTTCCATAATCTTTGTCTTTTGTCTTCTGGTAAAACTGTTTACTTTGGACCTGCTTCTGCTGCTTCTGAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCTACTCTCCAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATATTGAGAGGGATTTAGAAGAGATCAACGGAACAATTTCTATAGAACAAGCAATTGGAATCCTTGTGAGCTCATATAAATCATCTGAAAGAAACCAAGAAGTTAAAAATGAAGTAGCAATGCTATCTAATAAGGATAACAATTCAACATACAAGAAGAAAAAACATGCTGGCTTCATTAATCAATGCTTAGTTCTTACAAGAAGATCTTTTGTGAACATGTTTCGTGATCTTGGCTATTACTGGTTACGCCTTGGCATATATATTGCATTGTGTATAAGTTCAGCCACTATCTTTAATGGCTTGGATAAAAGTTATGGCTCAATTCAGGATAGAAGTTCATTTCTTATGTTTGTGTTTTCTTTCCTTACTTTCATGACCATTGGTGGATTCCCTTCTTATGTGGAGGATATGAAGGTATTTGAACGTGAGAGACTAAATGGACATTATGGTGTTACTGCATATGTGATTGGGAACACATTTTCATCTCTTCCATATTTATTGATGGTTTCACTAATTCCTGGAGCTATAGCATATTTCCCTCCTGGTCTTCAAAATGGATATGACCACTTTCTATATTTTATTTGTGCTCTATTTTCTTGTCTAATGTTAGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTTCCTGATTTTCTAATGGGAATTATAACTGGTGCTGGAATTCAAGGAATGATGATGTTGGCTGGTGGATTCTTTAGATTGCCAAATGATCTTCCAAAGCCATTTTGGAGATATCCTATGTACTATATTTCATTCCATAGATATGCTTTTCAAGGATCTTATAAAAATGAATTTGAAGGACTAAAATTTAATAGAGATGGTGGAATTGGTGGTTACATTAGTGGTGAAGAGATTTTGAGAAATAAATTTCATGTAGATATGAGTTACTCAAAGTGGGTTGATCTTGGAATATTGTTGGGTATGATTGTTTTGTATAGAGTTTTGTTTTTGATTATTATCAAAACTACTGAGAAGCTAAAACCTATTGTTGTATCATATATGTCAATGTCTCCTACGAAAACATTACAAGTCTTGGAGAATCCTAGTGCCACTCCTTTACATGGAGAAATTGTATAA 2019 0.3512 MTSLISAVPNIVEIEPTRDIAPKRMSNGGEEKGICLTWKDLWVTVDSSSSSKGKMKESKSILDGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLASNTRQSGEILINGNKQALAYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPDTMSKEEKKERADFTIKEMGLQDAINTRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIIASIHQPSIEVFQLFHNLCLLSSGKTVYFGPASAASEFFASNGFPCPTLQNPSDHLLKTINKDFDQDIERDLEEINGTISIEQAIGILVSSYKSSERNQEVKNEVAMLSNKDNNSTYKKKKHAGFINQCLVLTRRSFVNMFRDLGYYWLRLGIYIALCISSATIFNGLDKSYGSIQDRSSFLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTFSSLPYLLMVSLIPGAIAYFPPGLQNGYDHFLYFICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGMMMLAGGFFRLPNDLPKPFWRYPMYYISFHRYAFQGSYKNEFEGLKFNRDGGIGGYISGEEILRNKFHVDMSYSKWVDLGILLGMIVLYRVLFLIIIKTTEKLKPIVVSYMSMSPTKTLQVLENPSATPLHGEIV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04003 672 Pfam ABC transporter 63 213 IPR003439 GO:0005524
Trre7g04003 672 Gene3D - 43 324 IPR027417 -
Trre7g04003 672 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 29 650 - -
Trre7g04003 672 SMART AAA_5 71 260 IPR003593 GO:0016887
Trre7g04003 672 Pfam ABC-2 type transporter 368 579 IPR013525 GO:0016020|GO:0140359
Trre7g04003 672 FunFam ABC transporter G family member 11 34 331 - -
Trre7g04003 672 Pfam ABC-2 type transporter 245 315 IPR043926 GO:0140359
Trre7g04003 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 277 IPR027417 -
Trre7g04003 672 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 288 IPR003439 GO:0005524
Trre7g04003 672 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04003 Trre-Chr7 48246224 48251056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04003 61 273 Calmodulin-binding Proteins AT2G36910 28.767 4.87e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04003 K05681 - gmx:100813462 984.941