Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04002 ATGGTTTCTTCCCTATCTCTTCCCTTTAGTTGTGAAATTAAAGCTAGTAATTCAGAATCATTTAAAGATAGTGTTCTAGACATTGAGGCAACAACCACATTAGAAATAAGAAAGAGAGAAGAAATAGGTGAAGTTGATGGTATATGCTTAACATGGAAGGATCTATGGGTGAATACAATTTCATCAAATGGAAAGAATGGAAGCAAATCAATTCTTCAAGGATTAACTGGTTATGCTAAGCCTGGCCAACTCTTGGCCATAATGGGTCCTTCCGGCTGTGGCAAGTCTACGTTACTCGATACTTTAGCCGGGAGATTGAGTTCAAACACAAGACAAACAGGAGACATTTTGATCAATGGTCAGAAACAAGAACTGTCTTATGGAACCTCGGCTTATGTGACACAAGATGATACATTATTGACAACTTTAACTAGGGATGAAGCAGTGTACTATTCAGCACAACTTCAATTACCTAACACAATGTCAAAGGAAGAGAAGAAAGAAAGAGCTGATTTTACAATAAAAGAAATGGGTCTACAAGATGCAATTAACACAAGAATTGGAGGGTGGGGTGTAAAAGGAATAAGTGGAGGTCAAAAAAGGAGAGTCAGCATTTGCATTGAGATTCTAACACGTCCAAGGCTTCTCTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTATTATGTTATGAAAAGAATTGCTACTTTGGATCATAAAGATGGAATTCAGAGGACAATTATTACTTCCATCCACCAACCAAGTACTGAAGTTTTTCAACTTTTTCATAATCTCTGCCTTTTGTCTTCAGGTAGAACTGTTTACTTTGGATCTGCTTCTGCTGCATGTGAGTTTTTTGCTTTGAATGGATTTCCTTGTCCTCCTCTTCAAAATCCATGTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATATAGAGACATGGACTGGAACAATGACCACAGAAGAAGCAATTTGCATCCTTGTGAGTTCATATAAATCATCCGAAAGAAATCAAGATGTTCATAATGAAGTAGCAATATTATCTAAAAAGGACACTAACTCAGTGGATCATAAGAAGAAAGGGTATGCAGGGTTCTTCAATCAATGCTTAGTTCTTACCAAAAGGTCATCAGTGAACATGTTTCGTGATCTAGGCTATTATTGGTTGCGCTTAGGAATATATGTTGCACTGGCTATAAGTTTAGGCACTGTTTACTTTAATTTGGGTACAAGTTATGGCTCAATTAAGGATCGAGGTTCACTTCTTTCGTTTGTCTCTGGATTCTTAACTTTCATGAGCATTGGTGGATTTCCTTCCTTTGTGGAAGACATGAAGGTATTTCAAAGAGAAAGACAAAATGGGCATTATGGTGTGATTCCATATGTGATTGGGAACACATTTTCATCAATTCCATTTGTTTTACTGGTTACAATAATTCCTGCAGTTATAACTTATTATCTCTCTGGTCTTCAGAAAGGATATGAACACTTTTTATACTTTGCTAGTGTTCTATTTTCTAGTCTAATGCTAGTGGAGAGTCTTATGATGATAGTTGCAAGCATTGTTCCTAACTATCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGAATCATGATTTTGATTGGTGGATTCTTCAAATTGCCACATGATCTTCCCAAGATATTTTGGAGATATCCATTACACTATGTTGCATTTCATACATATGTGTTTGAAGGATTATTCAAGAATGAGTATGAAGGACTAAAATTTCCTATAAAAAATGAACAAGGCACAAATAGTTACACTACTGGTGAAGTGATTTTGAGAGATACTTGGCAAAGTAACATGAGTTACTCAAAATGGGTTGATCTTGCAATTTTGCTAGGAATGATTCTTTTGTACCGAGTTTTGTTCATTGTTATCATCAAGATTAAGGAGAAGATGAAGTCTATTGTTGGATCATTATTATCTTGCACGTTGGTGTCTCCCAAAACAATAATACATGTTGTGTAG 2016 0.3591 MVSSLSLPFSCEIKASNSESFKDSVLDIEATTTLEIRKREEIGEVDGICLTWKDLWVNTISSNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSNTRQTGDILINGQKQELSYGTSAYVTQDDTLLTTLTRDEAVYYSAQLQLPNTMSKEEKKERADFTIKEMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATLDHKDGIQRTIITSIHQPSTEVFQLFHNLCLLSSGRTVYFGSASAACEFFALNGFPCPPLQNPCDHLLKTINKDFDQDIETWTGTMTTEEAICILVSSYKSSERNQDVHNEVAILSKKDTNSVDHKKKGYAGFFNQCLVLTKRSSVNMFRDLGYYWLRLGIYVALAISLGTVYFNLGTSYGSIKDRGSLLSFVSGFLTFMSIGGFPSFVEDMKVFQRERQNGHYGVIPYVIGNTFSSIPFVLLVTIIPAVITYYLSGLQKGYEHFLYFASVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGIMILIGGFFKLPHDLPKIFWRYPLHYVAFHTYVFEGLFKNEYEGLKFPIKNEQGTNSYTTGEVILRDTWQSNMSYSKWVDLAILLGMILLYRVLFIVIIKIKEKMKSIVGSLLSCTLVSPKTIIHVV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04002 671 Gene3D - 51 289 IPR027417 -
Trre7g04002 671 Pfam ABC-2 type transporter 255 316 IPR043926 GO:0140359
Trre7g04002 671 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Trre7g04002 671 FunFam ABC transporter G family member 11 48 337 - -
Trre7g04002 671 SMART AAA_5 81 270 IPR003593 GO:0016887
Trre7g04002 671 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 41 655 - -
Trre7g04002 671 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 298 IPR003439 GO:0005524
Trre7g04002 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 290 IPR027417 -
Trre7g04002 671 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524|GO:0016887
Trre7g04002 671 Pfam ABC-2 type transporter 375 586 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04002 Trre-Chr7 48231143 48242876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04002 71 283 Calmodulin-binding Proteins AT2G36910 28.571 1.38e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04002 K05681 - gmx:100794527 953.74