Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03995 ATGAGTGGAACTGACAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACACAAATTCCCATCTGGTAGCAAGCAAATGCGATCTGGGTGGTCCTCTGCAGATGTTGCTGGTAATAACAGTTCAAAATGGGCTTATTCGGAAGGAAATGATAAATTAAGACCTGTTATGGGATATTCATCAAAAGAATCTTTTTCTGGAGGCAGAGGTTCATATGAGGATGATGCTATGAATGAAGACCATAGAATTTCGGATAGAAGAAGAGAATGGGACACCGATGGAAGTTACAGCAAGAAAATCTCTCCTTGGCAAGGGGAATGGGGACAAAAGAGGCACAGTCAATCTCCTATAAATGGTTGGAGCAGGAGCAGTCAGAGCCGGAGTCAGAGCCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGCGTTGATGATAGAAAAAGGATGAGGGTTGTAGGATCAACACGACCATGCAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCCGCATCATGATAACCAAAGTCGTGAAAATAGTTGGGAGGGTAAGCACAGGGAAGATAGAGCTCCCAGATACTCTGCTACCCATGAGAGAGGTGACCATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGCAGTTGTAGAATGGGAGCATCTTGCAAGTTTATGCATGATAACGACTCTGATGGATATGGTAAAGTTTCTATGGATGAATTCACTAGAGAAAGGGAAGATAGAGCTCCCAGATATCCTGCTACCCATGAGGGCGGGGACCATTCTCTTAAGAGGGGCAGATCTAATGAAGTTTGTACAAATTTTGCAAAAGGCAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAACGACTCGGATGGATATGGCAAAGTTTTTATGGATGAATTCACTAGAGAAAGAGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGGGTGGCCGGCATGTGCCTAATCGCACTAGTGATACTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAATTTTGTAAGTTTTCTCACGATAGGCAAGCATGTAGGAGCCCTGATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTAGAGATCATCAAATGTTGGATAGACAAAAATCGAGCCATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAGATGGGGTTCGGATGGCGATGTGGCTGATCCAGATAGAGTTAGGGACAGTCCAAAGCGAAATAATACTGTTTCTGTTTCTGATACAACAAAGCTGATCGAGAATAAAAGTGGAAATGTAGATGCCACAGACCCAGGATTTACTACTTTATCTATAACGGATGGATATGGGCATGAATTAGATAAGAGTGAGCTGCATGGTAAACCACCAATTTCGAGTGATACGAAGGAAGCTGATTGTTGGATAGAAGAAGATACTGGTGCCAACATGCATGGATCCCATTCAATAGTTAAAACAGACATTTGGCCAGGTGATGCAGAAATGTCTCCTGATTGGAATTATAAGACAGGATCTTCCAGCCATATGGAAGAACCTGGACAGAATAAGCATGGTATAAGGCAGGGTGGTACGCATTTAGCCATCTCAGAACCCGACAGAGTACAACTTGCTCCAGGACAAAGCATCAATCAGAATGCACAGAATGTAAATCCTTCGCATACTTCCAGCTTCCATGCAGTTGGACAAAGTCAAGTGGATGTTCCCATTCTTCCTTCAAGTGGAGGAATTGTTGATGCTACGCACAGACAAGAAGTATCTAATGAGAAGAAGTACATTGTGGAACCAAATATCACGGATTCAGGCTTATCACAAGTTAGTTCAATAAATCCTCCAACACAAAACGCTGTAAGCAATGAACAGCTTGCTCAACTCACGACCTCTCTGGCTCATTTCCTAGGAGGAGGTCAGCAACTACCGCAGCTATATGCTGCTTTAAATTCTCACGATTTAAAGGACAGTCCTACCCAAGCAAAAACTCAAGTGCCTGCAATGCCTGTTTCAATCACATGCATCAAACCTGATCCTCCCGTTGGACTCTCAAAGCAGTATGGTCCTGGGAATGATAGTATTGAGCAAACAAATGCTGATGCAAGTGGTGTGCCCCCAGCCATTCCTCCAAGTAGAAATACTGCTGAAGTGGAAATTCTGTCACAGTTGTCTAACCCTGGAAGACAAAATTGTGGTGATTCTATTAAGGGTGCCTCCTCAGAACTCGTCAAGAGTGATAATCTAATCCATTTGCAGCCTGGTCAAAACACAGTGGTGAAGAATAAGGATAACAATGAAGAGGTAGCTAAGGAAAGGAAAAATCCTGAAGATGGTCATAAAAGTACAAAAGAGAACGGTCCGCAAAACACGGACCAAAATGGTAGGCCTGATGATGCAAAGCAAACAAAGGAATTGAAAGGGATTCGTACGTTTAAATTTGCATTGGCTGAGGTTGTTAAGGAGCTACTGAAACCAGCATGGAAAGAAGGTCAAATAACTAATAAAGAAGATTATAAAACCATTGTGAAGAAAGTTCTTGATAAAGTAACAGCTACCATGCAGGGGCCCAATATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGCCTCAGTGA 2733 0.4219 MSGTDRKRSSKWDLSDEHKFPSGSKQMRSGWSSADVAGNNSSKWAYSEGNDKLRPVMGYSSKESFSGGRGSYEDDAMNEDHRISDRRREWDTDGSYSKKISPWQGEWGQKRHSQSPINGWSRSSQSRSQSRSPPRGFRRDSGVDDRKRMRVVGSTRPCRDFAAGKCRRGSLCNFPHHDNQSRENSWEGKHREDRAPRYSATHERGDHSLKSGRSNEACINFAKGSCRMGASCKFMHDNDSDGYGKVSMDEFTREREDRAPRYPATHEGGDHSLKRGRSNEVCTNFAKGRCRMGTSCKFVHDNDSDGYGKVFMDEFTREREIDRRHRDNSFEQGGRHVPNRTSDTPCKFFANGNCRNGKFCKFSHDRQACRSPDRRLRDDRWARNPGRDHQMLDRQKSSHSISPNRRLRDDRWGSDGDVADPDRVRDSPKRNNTVSVSDTTKLIENKSGNVDATDPGFTTLSITDGYGHELDKSELHGKPPISSDTKEADCWIEEDTGANMHGSHSIVKTDIWPGDAEMSPDWNYKTGSSSHMEEPGQNKHGIRQGGTHLAISEPDRVQLAPGQSINQNAQNVNPSHTSSFHAVGQSQVDVPILPSSGGIVDATHRQEVSNEKKYIVEPNITDSGLSQVSSINPPTQNAVSNEQLAQLTTSLAHFLGGGQQLPQLYAALNSHDLKDSPTQAKTQVPAMPVSITCIKPDPPVGLSKQYGPGNDSIEQTNADASGVPPAIPPSRNTAEVEILSQLSNPGRQNCGDSIKGASSELVKSDNLIHLQPGQNTVVKNKDNNEEVAKERKNPEDGHKSTKENGPQNTDQNGRPDDAKQTKELKGIRTFKFALAEVVKELLKPAWKEGQITNKEDYKTIVKKVLDKVTATMQGPNIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKPQ 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03995 910 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 365 IPR000571 GO:0046872
Trre7g03995 910 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 237 IPR000571 GO:0046872
Trre7g03995 910 MobiDBLite consensus disorder prediction 107 132 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 371 429 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 770 823 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 782 803 - -
Trre7g03995 910 ProSiteProfiles Zinc finger C3H1-type profile. 340 367 IPR000571 GO:0046872
Trre7g03995 910 Gene3D - 265 335 - -
Trre7g03995 910 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
Trre7g03995 910 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Trre7g03995 910 ProSiteProfiles Zinc finger C3H1-type profile. 212 239 IPR000571 GO:0046872
Trre7g03995 910 MobiDBLite consensus disorder prediction 180 211 - -
Trre7g03995 910 SMART c3hfinal6 154 178 IPR000571 GO:0046872
Trre7g03995 910 SMART c3hfinal6 277 302 IPR000571 GO:0046872
Trre7g03995 910 SMART c3hfinal6 213 238 IPR000571 GO:0046872
Trre7g03995 910 SMART c3hfinal6 340 366 IPR000571 GO:0046872
Trre7g03995 910 MobiDBLite consensus disorder prediction 1 151 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 1 23 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 25 47 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 73 95 - -
Trre7g03995 910 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 253 908 - -
Trre7g03995 910 Gene3D - 152 241 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 371 451 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 133 151 - -
Trre7g03995 910 SUPERFAMILY CCCH zinc finger 342 365 IPR036855 GO:0046872
Trre7g03995 910 SUPERFAMILY CCCH zinc finger 276 301 IPR036855 GO:0046872
Trre7g03995 910 MobiDBLite consensus disorder prediction 177 211 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 323 345 - -
Trre7g03995 910 Gene3D - 338 408 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 430 451 - -
Trre7g03995 910 Pfam RNA-binding, Nab2-type zinc finger 157 174 - -
Trre7g03995 910 Pfam RNA-binding, Nab2-type zinc finger 282 300 - -
Trre7g03995 910 MobiDBLite consensus disorder prediction 701 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03995 Trre-Chr7 48144554 48149596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03995 163 300 C2H2 Transcription Factor Family AT3G02830 29.577 1.69e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre7g03995 zf-CCCH 3.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03995 - K22909 gmx:100783856 990.334