Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03994 ATGAGTTCTTTTCTTCAACTTCATGCTAATGATTATGAGCAAGACAATAGCTCCAAAATTTTGCCAACCAATGTGGAATTTGAGTCCACATTTGAGGTGGAAGCCACTAAATCAGTAGAAACTGATAAGGTGGAAGGAATTTTCTTGACATGGGAAGATCTTTGGGTGACTGTTTCAAATGGAAATAATGGAAGGAAACCAATACTTGAAGGTCTAAAAGGATATGCAAAACCAGGACAACTTTTAGCTATAATGGGTCCTTCTGGTTGTGGCAAATCCACTCTTCTTGATGCTTTAGCGGGAAGATTAGGCTCTAAGACAAAACAAACAGGGAAGATCCTAATCAATGGCCGCAAACAAGCACTGGCTTATGGAACATCTGCCTATGTAACAGAAGATGATACAATTTTGAATACTCTAACAGTTAGAGAAGCTGTATACTACTCAGCTCAACTTCAATTACCAGATTCAATGTCCAAATCACAGAAACAAGAGAGAGCAGATTTCATAATCAAAGAAATGGGTCTACAAGATTCAATCAACACAAGAATTGGAGGATGGAAATCCAAAGGCATTAGTGGTGGACAAAAGAGAAGAGTTAGCATTTGCATTGAGATTTTAACGCATCCTCGACTTCTTTTCCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCTTATCATGTTATGAGTAGAATTTCTGGTTTAAATAAAATGGATGGTATTCAAATGACTATTATTGCATCTATTCATCAGCCAAGTAACGAAATTTTCCGACTTTTTCATAACCTTTGTCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTGTCTTTGCTGCAAATAAGTTTTTCTCATCAAATGGTTTTCCATGCCCAAGTCTCCAGAGTCCTTCTGATCACTTTGTAAGAACAATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGACTAGGTGGAGGGCTAAGCACAGAAGAAGCAATTCACATTCTTGTTAAATCATATGATTCATCTGAAATTAGTCACCAAGTTCAAAAAGAACTTTCTCAAATTAAAAAAAGGGTCTTGGACACAGTGGAGAAGACAAGCCATGCTGATTTTTTAACACAGTGTCTGATTCTTACAAGAAGATCTTTTGTGAATATGTATCGCGAAGCAGGCTATTATTGGTTACGCCTACTTATCTATGGTGCATTGGCTTTAAGTCTTGGTACCATGTTCTTTCGCATTGGTTCAAGCAGTGAATCAATTCAGGCTAGAGGTTCACTGCTTGTGTTTGTTGTTACTTTCTTGACATTCATAACTGTTTGTGGATTCCCTTCTTTTGTCGAGGATATGAAGGTATTTGAAAGAGAAAGACTTAATGGACATTATGGTGTAACTGCATTTACAATTGGAAACACATTATCTTCAATTCCATTCTTGGTATTGATGTCATTGATCCCAGGAACATTGGTTTATTACCTAGTTGGACTTCACCAAGGACATGAACAATTTGTGTACTTTATATCTATGCTTTTTATATCTGTCTTCTTAGTTGAGGGTCTCATGATGATTGTTGCAAGTATGGTTCCAAATTTCCTAATGGGAATAATCTTTGGTACTGGAATCTTGGGAATAATGATGTTAGATGGTGGATTCTATAGATTACCAAGTGATATACCAAAGCCATTTTGGAAATACCCTTTGCACTATATTTCACTTCACAAATATGCATATCAAGGATTGTTTAAGAATGAGTTTCAAGGTCTAATATTTACTACTAGCAATCAAGTTATAGTTAGTGGTGAAGATATATTGAAAAACTTGTGGCAAATGGAAATGAATTACTCAAAGTGGGTGGATTTTACTATTTTGGTTGGAATGGCTTTAGTTTATAGAATTATGTTCTTGATTATCATCAAGAGCTTTGAGAAGGTGAAGCCTATTGTTGCAGCTGTTAATTGTCCTCAAGAAATTTTTAGATTCACTAAAGTGACTAGGAGCAGTGAGATTGATTAG 2004 0.3618 MSSFLQLHANDYEQDNSSKILPTNVEFESTFEVEATKSVETDKVEGIFLTWEDLWVTVSNGNNGRKPILEGLKGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGRKQALAYGTSAYVTEDDTILNTLTVREAVYYSAQLQLPDSMSKSQKQERADFIIKEMGLQDSINTRIGGWKSKGISGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISGLNKMDGIQMTIIASIHQPSNEIFRLFHNLCLLSSGKTVYFGPVFAANKFFSSNGFPCPSLQSPSDHFVRTINKDFEQDPEKGLGGGLSTEEAIHILVKSYDSSEISHQVQKELSQIKKRVLDTVEKTSHADFLTQCLILTRRSFVNMYREAGYYWLRLLIYGALALSLGTMFFRIGSSSESIQARGSLLVFVVTFLTFITVCGFPSFVEDMKVFERERLNGHYGVTAFTIGNTLSSIPFLVLMSLIPGTLVYYLVGLHQGHEQFVYFISMLFISVFLVEGLMMIVASMVPNFLMGIIFGTGILGIMMLDGGFYRLPSDIPKPFWKYPLHYISLHKYAYQGLFKNEFQGLIFTTSNQVIVSGEDILKNLWQMEMNYSKWVDFTILVGMALVYRIMFLIIIKSFEKVKPIVAAVNCPQEIFRFTKVTRSSEID 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03994 667 ProSitePatterns ABC transporters family signature. 192 206 IPR017871 GO:0005524|GO:0016887
Trre7g03994 667 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 295 IPR003439 GO:0005524
Trre7g03994 667 Pfam ABC-2 type transporter 252 306 IPR043926 GO:0140359
Trre7g03994 667 Pfam ABC transporter 72 220 IPR003439 GO:0005524
Trre7g03994 667 Pfam ABC-2 type transporter 370 582 IPR013525 GO:0016020|GO:0140359
Trre7g03994 667 SMART AAA_5 78 271 IPR003593 GO:0016887
Trre7g03994 667 FunFam ABC transporter G family member 11 47 335 - -
Trre7g03994 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 281 IPR027417 -
Trre7g03994 667 Gene3D - 49 317 IPR027417 -
Trre7g03994 667 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 38 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03994 Trre-Chr7 48131604 48134952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03994 68 277 Calmodulin-binding Proteins AT2G36910 26.168 6.81e-09 57.4