Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03992 ATGAGTGAAAATGTTGTTGAGGAAGGGGATAAGGAGGGAAATATAACAGTTACATGGGAGAAATTAAGGGTAACTGTTCCAAATGGAAGCAAAAAAAGGAAAGCAATTCTGCAGGGTCTTACTGGTTATGCTCAACCTGGAAGACTTTTGGCTGTAATGGGTCCTTCTGGCTCTGGAAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTAAGCTCAAACATAAAGCACACAGGAAATATTCTAATCAATGGCCACAAACAAGCACTAGCTTATGGAATATCAGGATATGTAACACAAGACGACGCTATGCTGTCAACATTAACGGCCGGAGAAACTTTATATTACTCGGCTCAACTTCAATTTCCAGATTCCATGTCCATAACAGAGAAGAAAGAACAAGCAGATATTATACTCAGAGAAATGGGTCTAATAGATGCTTTTAACACAAGGGTTGGAGGATGGAGTTCTAAAGGCCTAAGTGGTGGACAGAAGAGGAGACTTAGCATTTGCATCGAGATACTAACTCGCCCGAGACTACTATTCCTTGATGAACCAACGAGCGGACTAGATAGCGCAGCTTCTTATTATGTTATGAGCAGGATTGCACGTTTGAATTTAAGCGACGGAATTCGAAGGACTATTGTTGTATCCATCCACCAACCTAGCAGTGAAGTTTTTGAACTTTTTCATGACCTTTGTCTTCTGTCTTCGGGTGAAACTGTGTATTTCGGTCCAGCCTACGATGCAAATCAGTTTTTTACTGCAAATGGTTTTCCTTGTCCAACACTCCACAATCCTTCAGATCACTACTTAAGGATCATAAACAAAGATTTTGAAATGGATGTTGAAGAAGGCTCTGGTAAGGGAATGACCACAGAAGAAGCAATTGGTATCCTTGTGAAGTCTTATAAATCGTCAAAAATTAGAAACCGAGTTAAAAAAGAAGTGGCAAAAATAACTGAAAGTGACTCTGGTGCAATAGGGAAGAAGAGGATCCATGCTGCATTTATGACTCAATGCCTTGTTCTTATAAGAAGATCTTCATTGCAATTGTTTCGTGACATTGGCAATTATTGGCTCCGTTTAATTGTCTTCATTTTAATTGCTATAAGCATCGGTTCTATCTTCTTTAACATTGGTTCAAGTAGTGGATCAGTATCTACTCAGGGTAGAGGCTCTTTGCTCACATTTCTTATTTCAGTTCTTACTTTCATGACCCTTGTTGGTGGATTCTCACCTCTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAACGGACACTATGGTGTTACTGCCTTTCTAATTGGCAATATATTTTCTGCTATTCCTTACATGCTAATGATCTCTCTAATTCCTGGAGGAATAGCATACTATCTTTGTGGAATGCACAAAGGACTAGAAAACTTTATATACTTTATTTCATTACTATTAGCCATTGTGATGTGGGTTGAGAGTCTTATGTTAGTTATTGGAAGCATATCGCCAAATTATGTAATAGGAATGTTCATTACTGGTGGAATTGAAGGACTAATGATTTTAACTGGTGGATTCTATAGATTACCAAATGAACTTCCTAAACCAATATGGAAATACCCGTTATACCATGTATCTTTCCTTAAGTATGCATTTCAAGGATCATTCAAAAATGAATTTGAAGGGTTAAATGTTTTGATAGGGACCAAAACTATTAGTGGTAAGGAAATATTGGCTGAGACATGGCATGTTGAAATGGGTCACTCTAAGTGGATTGATCTTGCTATCATGTTTGGTATGATTGTATTATATAGAGTTTTATTCTTGGTAATCACTAAGAGCAAGGAGAAGTTCAAGAATTTTGTTGCAGTCATAAGTGGTCCTTAA 1869 0.3772 MSENVVEEGDKEGNITVTWEKLRVTVPNGSKKRKAILQGLTGYAQPGRLLAVMGPSGSGKSTLLDALAGRLSSNIKHTGNILINGHKQALAYGISGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMSITEKKEQADIILREMGLIDAFNTRVGGWSSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIARLNLSDGIRRTIVVSIHQPSSEVFELFHDLCLLSSGETVYFGPAYDANQFFTANGFPCPTLHNPSDHYLRIINKDFEMDVEEGSGKGMTTEEAIGILVKSYKSSKIRNRVKKEVAKITESDSGAIGKKRIHAAFMTQCLVLIRRSSLQLFRDIGNYWLRLIVFILIAISIGSIFFNIGSSSGSVSTQGRGSLLTFLISVLTFMTLVGGFSPLLEEMKVFERERLNGHYGVTAFLIGNIFSAIPYMLMISLIPGGIAYYLCGMHKGLENFIYFISLLLAIVMWVESLMLVIGSISPNYVIGMFITGGIEGLMILTGGFYRLPNELPKPIWKYPLYHVSFLKYAFQGSFKNEFEGLNVLIGTKTISGKEILAETWHVEMGHSKWIDLAIMFGMIVLYRVLFLVITKSKEKFKNFVAVISGP 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03992 622 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 11 617 - -
Trre7g03992 622 Pfam ABC-2 type transporter 220 282 IPR043926 GO:0140359
Trre7g03992 622 ProSitePatterns ABC transporters family signature. 160 174 IPR017871 GO:0005524|GO:0016887
Trre7g03992 622 FunFam ABC transporter G family member 11 15 303 - -
Trre7g03992 622 SMART AAA_5 46 239 IPR003593 GO:0016887
Trre7g03992 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 254 IPR027417 -
Trre7g03992 622 Gene3D - 16 270 IPR027417 -
Trre7g03992 622 Pfam ABC transporter 38 188 IPR003439 GO:0005524
Trre7g03992 622 CDD ABCG_EPDR 15 245 - -
Trre7g03992 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 17 263 IPR003439 GO:0005524
Trre7g03992 622 Pfam ABC-2 type transporter 339 554 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03992 Trre-Chr7 48105230 48109068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03992 3 224 Calmodulin-binding Proteins AT2G36910 30.172 2.05e-11 65.5