Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03979 ATGGGGTTTCATCACAGAAAATTAATATCTTTCTCTGATTGTGTAGCCATCTGTCATGAGGAACGCTCTTGTTCCACAGACTGTGATGAAGATTGCTTCAAAGCCTGCATTAGCTACAACCTTCTTCCACCACCACCACCACTATCTTATCATCACAACAACAAAACCTCAACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTCTTTTCCTCGTTTTATGCTTTTATGCCTTGTATGTCAAGTTTTTCTCTCATAGGAACAGGTCAAGAAGAACAACCTTATTAACAAGACAACAAACAGAACATGGTTTTGTTGTTGATGAAGAACATGATGATGGTTCTGTTGTTGATCACCCCATATGGTATATTCGTACTCTCGGTCTTCATGAATCGATTATTAATGCAATCACTGTTGTTAAATTTAAGAAAGATGAAGGCTTGATTGATGGGTCAGATTGTTCTATTTGTTTGAGTGAATTTGAACAAGATGAAAATCTTAGACTTTTGCCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACATACTAATTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTTTAAGGATTCCATCTATGGATCCTAATGTTTTTGTCGAAAATTCTCGTCGTATGGAAGTTTTGGAAAATAGTAGTGGAAATGGAAATGGAATGGAAGATAGTGTTGAAGAAGAAGAAGCCGAGGAAGAGGTTGAGGAAGATGAGAATTTAGGTTTAGAGATGGTAAATATGCAGCAGCCAAGAAGATCAGTTTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTATCCAATTTTCTATCAGTGGAATCTCAAGGGAATTCTAATAAGGAACAAGTTGCTTCAAAGAGGGTTGGTGGAAATGGAAATATTGTAAATATGCATAGTGCTCCTTGTTCAATGAAAAGGTCAAGATCCTTCAATGGAAAACACCTATTATCATTGTATAGCAACAGTCAGAAAAAGATAAATCCACCAGTGAGAAGCTTTTGA 1047 0.3629 MGFHHRKLISFSDCVAICHEERSCSTDCDEDCFKACISYNLLPPPPPLSYHHNNKTSTYLIISFSIVAALFLVLCFYALYVKFFSHRNRSRRTTLLTRQQTEHGFVVDEEHDDGSVVDHPIWYIRTLGLHESIINAITVVKFKKDEGLIDGSDCSICLSEFEQDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVVDPLRIPSMDPNVFVENSRRMEVLENSSGNGNGMEDSVEEEEAEEEVEEDENLGLEMVNMQQPRRSVSLDSSSAAKINLALSNFLSVESQGNSNKEQVASKRVGGNGNIVNMHSAPCSMKRSRSFNGKHLLSLYSNSQKKINPPVRSF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03979 348 Pfam Ring finger domain 153 196 IPR001841 -
Trre7g03979 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Trre7g03979 348 SUPERFAMILY RING/U-box 145 202 - -
Trre7g03979 348 SMART ring_2 154 195 IPR001841 -
Trre7g03979 348 SMART FANCL_C_2 150 203 - -
Trre7g03979 348 CDD RING-H2_EL5-like 153 196 - -
Trre7g03979 348 FunFam RING-H2 finger protein ATL54 129 202 - -
Trre7g03979 348 MobiDBLite consensus disorder prediction 225 244 - -
Trre7g03979 348 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Trre7g03979 348 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 52 202 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03979 Trre-Chr7 48008409 48009455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03979 68 248 C3H Transcription Factor Family AT1G72220 45.604 2.99e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03979 - - mtr:11411830 484.567