Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03964 ATGGCTACCATGCCTGTACGAGGGTTGGCTCTGAGTACGAAGGTCGAAGGTGCTTCAGTTGTCAATGCTTTGCCATCGATGCAAGGATGGCTACCTGTACGGAAATCACTTTACGAGCTCTTCGAGTATGCTAGTACTTCAAGTATGGAACAAGTAATTGAAAGGCGTAATGGATATTCAGCAAATCATAGATTAATGGACCATCCATCTACTGATAAGCTTCAGGTTGAGAGTGACTCTAATTACGACACTTTGTGCAAGAAATTAGAAGATAAATCTCGTGAACTGAGGCATCTGAATGGAGAAAATCTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGCAATACTTAAAAGAAGTTTGTCCAGTGTTTCAAAAATAAAGGATGAAATGTTTATGCAAGACATCAACACCCTTAAGAGAAAGGAAGTGAAACTGATAGAAGAAAACCAAAGATTGAAATATGTGGTACCAGACCTTATAAGTGGACAAATGCGACAATCATTGGAATCTGTTATTAGCGGATCATCTTATTTTGATGACAGTGACACATCTCTCAACTTGGGGTTACAATTACTAAAATAA 591 0.3858 MATMPVRGLALSTKVEGASVVNALPSMQGWLPVRKSLYELFEYASTSSMEQVIERRNGYSANHRLMDHPSTDKLQVESDSNYDTLCKKLEDKSRELRHLNGENLQELTVQELQKLEAILKRSLSSVSKIKDEMFMQDINTLKRKEVKLIEENQRLKYVVPDLISGQMRQSLESVISGSSYFDDSDTSLNLGLQLLK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03964 196 Coils Coil 82 102 - -
Trre7g03964 196 ProSiteProfiles K-box domain profile. 75 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g03964 196 Pfam K-box region 77 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03964 Trre-Chr7 47850926 47867968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03964 39 192 MADS-box Gene Family AT4G24540 38.922 4.28e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03964 - - aprc:113860188 172.555