Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03944 ATGGTGAATTCATCTCATAACGGGTTAATGCTGCACTATACCAATGCACCTTCCATGGTTTCTGATGAAGTTGTTACTTCTCCTCCACTCTCTCGTGCCAATGAACTCACCATTTCCTTTGAAGGAGAAGTTTATGTTTTCCCTTCCGTTACTCCTGAAAAGGTGCAGGCTGTATTGTTATTCTTAGGAGGGCAGCAGGAGACACCGAATACCGTCCCCACCTCCGATTTTTTGGTGCAGGAAAAATGTCAGGACATTTGGGGGATAAATGATCCTTCCCGTAGTTCAAAGCTTTCAAGGAGAATTGAATCACTTGTTAGGTTCCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAGTTCGGTACACTTGCCGTAAAGAGGCTGCTGAGAGAATGCAACGGAAGAACGGACAGTTTGCATCATTGAAGGAAGAGTACTGTTCTCCTGCTGAAAACCAGGACTCTAGCAACGGTACACCTTGCTTAGAATCTACTGAATGTAGATGCCAACATTGTGGAATTGGTGAGAAGAGTACTCCAGTAATGCGTCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCCTGCGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAGGGACTGCTCTAGAACAGAATGAACTGGATACTTCAACTGATATAAAGCCTTTAAAAACTGAGCCAGAAAATTCATGTCCTGCGCAGGACACGGAGGATACTTCAACTGATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCCTGTGCAGGACAAGGAGGAAAGCTCCCGGGAAACAAAGCCCGTGCTAATGGATGCCATACAGCCACATGAGATGATAAATGAGCAGTATATGCTCGAATCTGCTGAAGCGGTTACTGACAATCTGTCCATTCAAGTGGAGGATAATGCTCTTGATCTGCTTGAGCAGGATAATACTATGGAGGATTTTGCTGATGCTTCTGGGACTGAATTTGAGTTTCCTGCTGGTTTTGATGATCTGATTGATATCGATGATTCTAACATGAGGACTTACTGGCTATGA 1071 0.4416 MVNSSHNGLMLHYTNAPSMVSDEVVTSPPLSRANELTISFEGEVYVFPSVTPEKVQAVLLFLGGQQETPNTVPTSDFLVQEKCQDIWGINDPSRSSKLSRRIESLVRFREKRKERCFEKKVRYTCRKEAAERMQRKNGQFASLKEEYCSPAENQDSSNGTPCLESTECRCQHCGIGEKSTPVMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGGTALEQNELDTSTDIKPLKTEPENSCPAQDTEDTSTDIKPLKTEPENSCPVQDKEESSRETKPVLMDAIQPHEMINEQYMLESAEAVTDNLSIQVEDNALDLLEQDNTMEDFADASGTEFEFPAGFDDLIDIDDSNMRTYWL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03944 356 ProSitePatterns GATA-type zinc finger domain. 170 197 IPR000679 GO:0006355|GO:0043565
Trre7g03944 356 Gene3D - 163 222 IPR013088 GO:0006355|GO:0008270
Trre7g03944 356 Pfam GATA zinc finger 170 206 IPR000679 GO:0006355|GO:0043565
Trre7g03944 356 ProSiteProfiles CCT domain profile. 101 143 IPR010402 GO:0005515
Trre7g03944 356 ProSiteProfiles Tify domain profile. 29 64 IPR010399 -
Trre7g03944 356 PANTHER GATA TRANSCRIPTION FACTOR 28 16 335 IPR045280 GO:0006355
Trre7g03944 356 SMART GATA_3 164 217 IPR000679 GO:0006355|GO:0043565
Trre7g03944 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 216 - -
Trre7g03944 356 SMART tify_2 29 64 IPR010399 -
Trre7g03944 356 Pfam tify domain 33 63 IPR010399 -
Trre7g03944 356 MobiDBLite consensus disorder prediction 218 275 - -
Trre7g03944 356 Pfam CCT motif 101 142 IPR010402 GO:0005515
Trre7g03944 356 Coils Coil 126 146 - -
Trre7g03944 356 CDD ZnF_GATA 169 212 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03944 Trre-Chr7 47698057 47702849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03944 32 213 Tify Gene Family AT1G51600 52.736 1.59e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre7g03944 CCT 1.1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03944 - - mtr:11405700 462.996