Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03943 ATGAAAATGGTGAATTCATCTCATAACGGGTTAATGCTGCACTATACCAATGCACCTTCCATGGTTTCTGATGAAGTTGTTACTTCTCCTCCACTCTCTCGTGCCAATGAACTCACCATTTCCTTTGAAGGAGAAGTTTATGTTTTCCCTTCCGTTACTCCTGAAAAGGTGCAGGCTGTATTGTTATTCTTAGGAGGGCAGCAGGAGACACCGAATACCGTCCCCACCTCCGATTTTTTGGTGCAGGAAAAATGTCAGGACATTTGGGGGATAAATGATCCTTCCCGTAGTTCAAAGCTTTCAAGGAGAATTGAATCACTTGTTAGGTTCCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAGTTCGGTACACTTGCCGTAAAGAGGCTGCTGAGAGAATGCAACGGAAGAACGGACAGTTTGCATCATTGAAGGAAGAGTACTGTTCTCCTGCTGAAAACCAGGACTCTAGCAACGGTACACCTTGCTTAGAATCTACTGAATGTAGATGCCAACATTGTGGAATTGGTGAGAAGAGTACTCCAGTAATGCGTCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCCTGCGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAGGGACTGCTCTAGAACAGAATGAACTGGATACTTCAACTGATATAAAGCCTTTAAAAACTGAGCCAGAAAATTCATGTCCTGCGCAGGACACGGAGGATACTTCAACTGATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCCTGTGCAGGACAAGGAGGAAAGCTCCCGGGAAACAAAGCCCGTGCTAATGGATGCCATACAGCCACATGAGATGATAAATGAGCAGTATATGCTCGAATCTGCTGAAGCGGTTACTGACAATCTGTCCATTCAAGTGGAGGATAATGCTCTTGATCTGCTTGAGCAGGATAATACTATGGAGGATTTTGCTGATGCTTCTGGGACTGAATTTGAGTTTCCTGCTGGTTTTGATGATCTGATTGATATCGATGATTCTAACATGAGGACTTACTGGCTATGA 1077 0.4401 MKMVNSSHNGLMLHYTNAPSMVSDEVVTSPPLSRANELTISFEGEVYVFPSVTPEKVQAVLLFLGGQQETPNTVPTSDFLVQEKCQDIWGINDPSRSSKLSRRIESLVRFREKRKERCFEKKVRYTCRKEAAERMQRKNGQFASLKEEYCSPAENQDSSNGTPCLESTECRCQHCGIGEKSTPVMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGGTALEQNELDTSTDIKPLKTEPENSCPAQDTEDTSTDIKPLKTEPENSCPVQDKEESSRETKPVLMDAIQPHEMINEQYMLESAEAVTDNLSIQVEDNALDLLEQDNTMEDFADASGTEFEFPAGFDDLIDIDDSNMRTYWL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03943 358 Pfam tify domain 35 65 IPR010399 -
Trre7g03943 358 Pfam CCT motif 103 144 IPR010402 GO:0005515
Trre7g03943 358 Pfam GATA zinc finger 172 208 IPR000679 GO:0006355|GO:0043565
Trre7g03943 358 ProSitePatterns GATA-type zinc finger domain. 172 199 IPR000679 GO:0006355|GO:0043565
Trre7g03943 358 MobiDBLite consensus disorder prediction 220 277 - -
Trre7g03943 358 Coils Coil 128 148 - -
Trre7g03943 358 CDD ZnF_GATA 171 214 IPR000679 GO:0006355|GO:0043565
Trre7g03943 358 ProSiteProfiles CCT domain profile. 103 145 IPR010402 GO:0005515
Trre7g03943 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 218 - -
Trre7g03943 358 Gene3D - 165 224 IPR013088 GO:0006355|GO:0008270
Trre7g03943 358 ProSiteProfiles Tify domain profile. 31 66 IPR010399 -
Trre7g03943 358 PANTHER GATA TRANSCRIPTION FACTOR 28 16 337 IPR045280 GO:0006355
Trre7g03943 358 SMART tify_2 31 66 IPR010399 -
Trre7g03943 358 SMART GATA_3 166 219 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03943 Trre-Chr7 47698057 47702855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03943 34 215 Tify Gene Family AT1G51600 52.736 1.88e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre7g03943 CCT 1.1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03943 - - mtr:11405700 465.307