Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03942 ATGAAAATGGTGAATTCATCTCATAACGGGTTAATGCTGCACTATACCAATGCACCTTCCATGGTTTCTGATGAAGTTGTTACTTCTCCTCCACTCTCTCGTGCCAATGAACTCACCATTTCCTTTGAAGGAGAAGTTTATGTTTTCCCTTCCGTTACTCCTGAAAAGGTGCAGGCTGTATTGTTATTCTTAGGAGGGCAGCAGGAGACACCGAATACCGTCCCCACCTCCGATTTTTTGGTGCAGGAAAAATGTCAGGACATTTGGGGGATAAATGATCCTTCCCGTAGTTCAAAGCTTTCAAGGAGAATTGAATCACTTGTTAGGTTCCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAGTTCGGTACACTTGCCGTAAAGAGGCTGCTGAGAGAATGCAACGGAAGAACGGACAGTTTGCATCATTGAAGGAAGAGTACTGTTCTCCTGCTGAAAACCAGGACTCTAGCAACGGTACACCTTGCTTAGAATCTACTGAATGTAGATGCCAACATTGTGGAATTGGTGAGAAGAGTACTCCAGTAATGCGTCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCCTGCGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAGGGACTGCTCTAGAACAGAATGAACTGGATACTTCAACTGATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCCTGTGCAGGACAAGGAGGAAAGCTCCCGGGAAACAAAGCCCGTGCTAATGGATGCCATACAGCCACATGAGATGATAAATGAGCAGTATATGCTCGAATCTGCTGAAGCGGTTACTGACAATCTGTCCATTCAAGTGGAGGATAATGCTCTTGATCTGCTTGAGCAGGATAATACTATGGAGGATTTTGCTGATGCTTCTGGGACTGAATTTGAGTTTCCTGCTGGTTTTGATGATCTGATTGATATCGATGATTCTAACATGAGGACTTACTGGCTATGA 1008 0.4415 MKMVNSSHNGLMLHYTNAPSMVSDEVVTSPPLSRANELTISFEGEVYVFPSVTPEKVQAVLLFLGGQQETPNTVPTSDFLVQEKCQDIWGINDPSRSSKLSRRIESLVRFREKRKERCFEKKVRYTCRKEAAERMQRKNGQFASLKEEYCSPAENQDSSNGTPCLESTECRCQHCGIGEKSTPVMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGGTALEQNELDTSTDIKPLKTEPENSCPVQDKEESSRETKPVLMDAIQPHEMINEQYMLESAEAVTDNLSIQVEDNALDLLEQDNTMEDFADASGTEFEFPAGFDDLIDIDDSNMRTYWL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03942 335 ProSitePatterns GATA-type zinc finger domain. 172 199 IPR000679 GO:0006355|GO:0043565
Trre7g03942 335 Pfam CCT motif 103 144 IPR010402 GO:0005515
Trre7g03942 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 218 - -
Trre7g03942 335 Coils Coil 128 148 - -
Trre7g03942 335 CDD ZnF_GATA 171 214 IPR000679 GO:0006355|GO:0043565
Trre7g03942 335 ProSiteProfiles CCT domain profile. 103 145 IPR010402 GO:0005515
Trre7g03942 335 Pfam GATA zinc finger 172 208 IPR000679 GO:0006355|GO:0043565
Trre7g03942 335 ProSiteProfiles Tify domain profile. 31 66 IPR010399 -
Trre7g03942 335 SMART tify_2 31 66 IPR010399 -
Trre7g03942 335 Pfam tify domain 35 65 IPR010399 -
Trre7g03942 335 PANTHER GATA TRANSCRIPTION FACTOR 28 16 314 IPR045280 GO:0006355
Trre7g03942 335 Gene3D - 165 224 IPR013088 GO:0006355|GO:0008270
Trre7g03942 335 SMART GATA_3 166 219 IPR000679 GO:0006355|GO:0043565
Trre7g03942 335 MobiDBLite consensus disorder prediction 220 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03942 Trre-Chr7 47698057 47702855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03942 34 215 Tify Gene Family AT1G51600 52.736 1.45e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre7g03942 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03942 - - mtr:11405700 474.167