Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03935 ATGACTTCTTCTTGGTTTCTCAAACTGCTTTCCAAATGCCTTCATCACTTTTCATGGCCTGTTGTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCTATGAAAAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCACTAATTTACCTCTTTGAGTATGCTTTTATGACCCATCTTCTATGGTTTCACCTTTGGCTGTACATTAAGCTAATGATCGTCTTCTGGCTTATCATACCTGACTTTGGACGAGCTTCTTATGTTTATAATAACCTTATGTGCACCATGAAACTGCAAATAGTCACATGCTGGAGGAAGTGTTTTGTTGAGAAAGATAACTTTATAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGGGGCCTTTGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGATGCAGAAGTGTCAAATGACATCAAAGCTACTGAGATGCTAAAGAAAAATGGGGAAAGATTTCAAACAGAACACAAAGAGATCAAAGATTTGGAGGCTATTGTGAAAACAGAAATTCCTGCAACCAAGCAAATGACCTATGCTAATACTGCGGCAAGTCAAACCAAAGTAGAAACGAAAGGAATATTGGGAAGAGACCCAGCTAGTGGAGAGATTTCTCAAAGTTATACTCAGAAAGAAGTGCAGAAAGAATGGACTTGTGCTTTGTGTTTGGTAAAAACATCGAGCGAGATAACCTTAATTTCCCACCTCAATGGGAGGAAACACAGGGATGCTTGTGAAGCAGCATCAGCAACTTTGAAAGTAAAGAAGCAACCTGCTACGCAGAAGAACGTCCTGCCAGAACCTTTTAGGATGGTTAATTCCAAATTAATATGTAAAGTTTGTAATGTTATGCTTCCAAGTGAGGAGTGCATGGCCTCTCACATTAAAGGGGTGAAGCACTTGTCTAATATGAAAAGTTGA 975 0.3908 MTSSWFLKLLSKCLHHFSWPVVALVYPMCASVQAIETDSYEKTKHLISYWILLSLIYLFEYAFMTHLLWFHLWLYIKLMIVFWLIIPDFGRASYVYNNLMCTMKLQIVTCWRKCFVEKDNFIMHAERYMKENGTGAFEKLIASKNTMCRPDAEVSNDIKATEMLKKNGERFQTEHKEIKDLEAIVKTEIPATKQMTYANTAASQTKVETKGILGRDPASGEISQSYTQKEVQKEWTCALCLVKTSSEITLISHLNGRKHRDACEAASATLKVKKQPATQKNVLPEPFRMVNSKLICKVCNVMLPSEECMASHIKGVKHLSNMKS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03935 324 Pfam Zinc-finger of C2H2 type 295 318 - -
Trre7g03935 324 Pfam Zinc-finger of C2H2 type 235 259 - -
Trre7g03935 324 PANTHER HVA22-LIKE PROTEINS 10 131 IPR004345 -
Trre7g03935 324 Pfam TB2/DP1, HVA22 family 27 100 IPR004345 -
Trre7g03935 324 SUPERFAMILY beta-beta-alpha zinc fingers 227 266 IPR036236 -
Trre7g03935 324 SMART c2h2final6 235 259 IPR013087 -
Trre7g03935 324 SMART c2h2final6 294 318 IPR013087 -
Trre7g03935 324 Gene3D Classic Zinc Finger 270 324 - -
Trre7g03935 324 Gene3D Classic Zinc Finger 218 265 - -
Trre7g03935 324 SMART ZnF_U1_5 232 266 IPR003604 GO:0003676|GO:0008270
Trre7g03935 324 SMART ZnF_U1_5 291 324 IPR003604 GO:0003676|GO:0008270
Trre7g03935 324 SUPERFAMILY beta-beta-alpha zinc fingers 283 323 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03935 Trre-Chr7 47619085 47620987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03935 235 323 C2H2 Transcription Factor Family AT2G19380 30.693 2.35e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03935 - - tpra:123914627 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03935 7 47619085 47620987 Trre7g03935 7 47619085 47620987 ECH