Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03907 ATGGAATCTATTATCGAGCGTTATAAGTTATCGGAGGACCGCCATCAAGCAGTGGATCCTGTTTTGGATGTCAAGTTTTGGCAAAGAGAAGCAGCAAGCTTGAGGCAACAATTACAGCACTTGAATGATAGCCAAAGGCAATTGATGGGGCAAGAACTATCTAGTTTGGATTTTAATGAGCTGGGGCATCTAGAGCACCAATTGGAGATGAGTTTGAAAAGCATTCGCACGAGAAAGGGTCTAATTTATAGTGATGAGATCAATGAATTACACAAAAAGGGAAGCCTTAGTAGTAAAGAAAATGAAGAACTGCATAAGAAGATAGACCAAATTGGTGAGGAAAATGCAAAACTAGAAAAGGTTATTGGTGCAAGGCGTAGGGAATATGCAACGACCAATCCTTCATACAGTACTAGGATCAGCTATGGATGTGATGAACCAATCAGTCTCCAGCTAAGGCAGCCACAACCCCAATAG 477 0.413 MESIIERYKLSEDRHQAVDPVLDVKFWQREAASLRQQLQHLNDSQRQLMGQELSSLDFNELGHLEHQLEMSLKSIRTRKGLIYSDEINELHKKGSLSSKENEELHKKIDQIGEENAKLEKVIGARRREYATTNPSYSTRISYGCDEPISLQLRQPQPQ 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03907 158 Coils Coil 101 121 - -
Trre7g03907 158 Coils Coil 24 51 - -
Trre7g03907 158 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g03907 158 Pfam K-box region 23 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03907 Trre-Chr7 47265844 47268183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03907 1 157 MADS-box Gene Family AT2G14210 41.615 1.27e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03907 K09264 - psat:127102740 200.29