Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03888 ATGTTGGAGTCTTTACTAACTTGTTCTCAAAGCCTCAAGGGATATGACCTGACAAAACAAAAGAATCCTTGTTATTCTCGTGCTGCTTCGCGAATTTGTTCGAATTCTATGTTTACTTGTTCTTCAGTTGACAAGCAAGTTCCTATTACATCACATATATGTTGTCACAGTACAGCTTTATCAGAAAAACTCGGTAGAAGAACATCTCTGGATGTTCCTTCGTTTTCTGGTCGGAAACTATCCTATTTCTCTAAGTATAGGTCACTACAATGGGAACGGTTGCGTACAAATGCAACATATGATGTTGCTGGTGCTGTTGAAGTCATCAATGATTTAGGATTGGATACTCTTACTTTCTTGGCAGTTACTGTCTTTATCGTCCCCTCGTTCAAGTTAATTAAAGCCAGTCCTATACTTGGTTTCTTCTGTGCTGGGGTGGTGCTCAATCAGTTTGGTTTAATCAGGAACCTTGAAGATGTTAAAGTTTTGTCTGAATGGGGGATCCTTTTCTTGCTGTTTGAGATGGGTTTAGAACTTTCACTAGCACGTCTTAAAGCTCTTGCAAAATATGCCTTTGGAATGGGATTGGCTCAGGTTCTACTATCTACATTAGCATTCACTGCTTTTGAGCTTCCACCAAATGGGGCTGTTGGAACAAAAATTTTGCAATATCTTTTCCACTCAAGGTCTGATTTGGTGAACATCAGAAGTATCGATGAAGCTGTAGTGATTGGGGCTGCTCTCTCTCTGTCGTCTTCTGCGTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAACTTCCTACAAGGCTTGGTTCAGCAACTCTTGGAATACTTCTTTTGCAGGACATAGCTGTTGTGCCTCTTTTGGTCATACTTCCAGTACTTGAGAGCCAGAATATGGCTGAGGGAAGTATTTGGCCCATGCTTGCTCAAGAAAGTTTGAAGGCATTAGGTGGATTGGGTCTGCTTTCTTTTGGAGCAAAGTTCTTTCTCAGAAGAGTTTTTGAGGTTGTAGCAGATACAAGAAGTTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTATTGCCGGGACTTCACTAATCACACAGAAATTGGGCTTCAGTGATACGCTTGGAGCATTTTTAGCTGGGGCAATCCTAGCAGAGACAAATTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTGCTCGGGTTGTTTTTTCTAACTACAGGGACTTCAATTGACATGCAGGTTCTCTTGAGAGAGTGGCCAAACGTACTTGCGCTCTTGGCGGGTTTAATTACTATCAAGACATTGATTATAACTGCGATTGGTCCTCGTGTTGGCCTTACTTTAAAAGAAAGTGTAAGAATAGGATTGCTTCTATCCCAAGGAGGAGAGTTTGGATTTGTAGTATTCTCTTTGGCGAATAGTCTTGGGGTGCTTCCACTTGAGCTCAACAAGCTGCTCATAATTGTTGTTGTTTTGTCAATGGCGTTAACCCCATTTCTGAATGAAGCTGGAAGGAGGGCTGCTAGCTTTATTGAAGACAATTATGAAGCTGAGAATAAAGAGAAAGATTCTGAGATGATTAACTTTGAAGTTAATGAACCTGTCGTCGTCCTTGGATTTGGACAAATGGGGCAGGTCCTTGCCAATTTGCTGTCCAACCCAATGGCTTCTGGAGGAGATAGTGATGGAATAGGCTGGCCTTATGTGGCATTTGATATTGACCCTAGGGTTGTAAAGGCAGCTAGAAAACAAGGTTTTCCTATTCTCTATGGGGATGGATCACGTCCAGCTGTTCTTCAATCTGCCGGTATCTCTTCGCCAAAAGCTATCATGATTATGCTCACTGAGAAGACGAAGTCAATTGAAGCTGTTCAGAGGCTACGACTGGCTTTTCCTGCAGTTCCAATATACGCCAGAGCTCGAGATCTAAAACATCTTTTAGATTTGAAGAAAGCAGGTGCAACGGATGCTACTTTGGAAAAGGCTGAGACTAGCTTACAACTTGGTTCTAAGATGCTGAAAGGCCTCGGGATGATGTCCGATGATGTATCATTTTTGAGTCAGCTTGTTAGAGATTCTATGGAGCAACAAGCTGAAGAAGAAATCAGCCTACGAGAATATCGGGAATCAAATATAATGGAACCATTGCAGGTGAGAGTTTCTGACATAAGGGGGCCACGCATTCCGGTGACAACTACTACACCAAAATCTGAATTATCAGTACAGAACCAGAAAGATCAAGCTTCATTGAGCACAATTCAAAAGGAAGCAGATCCTGATGAACAAGATTATGAGCTAAATCAAGCTGTTAAATTAGAAGGAAACGGTGCTTCATATAGCAAACAAGATATCGAAGAAAGCTCAGCGGTTGGATCTCAAGATGATTTAGGAAAGTAG 2403 0.4182 MLESLLTCSQSLKGYDLTKQKNPCYSRAASRICSNSMFTCSSVDKQVPITSHICCHSTALSEKLGRRTSLDVPSFSGRKLSYFSKYRSLQWERLRTNATYDVAGAVEVINDLGLDTLTFLAVTVFIVPSFKLIKASPILGFFCAGVVLNQFGLIRNLEDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMGLAQVLLSTLAFTAFELPPNGAVGTKILQYLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRLGSATLGILLLQDIAVVPLLVILPVLESQNMAEGSIWPMLAQESLKALGGLGLLSFGAKFFLRRVFEVVADTRSSEAFVALCLLTIAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDMQVLLREWPNVLALLAGLITIKTLIITAIGPRVGLTLKESVRIGLLLSQGGEFGFVVFSLANSLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEDNYEAENKEKDSEMINFEVNEPVVVLGFGQMGQVLANLLSNPMASGGDSDGIGWPYVAFDIDPRVVKAARKQGFPILYGDGSRPAVLQSAGISSPKAIMIMLTEKTKSIEAVQRLRLAFPAVPIYARARDLKHLLDLKKAGATDATLEKAETSLQLGSKMLKGLGMMSDDVSFLSQLVRDSMEQQAEEEISLREYRESNIMEPLQVRVSDIRGPRIPVTTTTPKSELSVQNQKDQASLSTIQKEADPDEQDYELNQAVKLEGNGASYSKQDIEESSAVGSQDDLGK 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03888 800 Pfam TrkA-N domain 537 659 IPR003148 GO:0006813
Trre7g03888 800 ProSiteProfiles RCK N-terminal domain profile. 536 668 IPR003148 GO:0006813
Trre7g03888 800 MobiDBLite consensus disorder prediction 728 800 - -
Trre7g03888 800 Gene3D - 534 705 - -
Trre7g03888 800 FunFam K(+) efflux antiporter 3, chloroplastic 111 510 - -
Trre7g03888 800 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 96 751 - -
Trre7g03888 800 Pfam Sodium/hydrogen exchanger family 118 503 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre7g03888 800 MobiDBLite consensus disorder prediction 729 757 - -
Trre7g03888 800 FunFam Glutathione-regulated potassium-efflux system protein KefB 534 706 - -
Trre7g03888 800 Gene3D - 111 510 IPR038770 -
Trre7g03888 800 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 537 675 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03888 Trre-Chr7 47104445 47112921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03888 6 726 Inorganic Solute Cotransporters AT4G04850 71.212 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03888 K03455 - gmx:100798214 1157.13