Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03876 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATTCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGATCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGATGATATACGGGCAAGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGACTGCAATAAGGAATCCAATCACATGAATTTAAACTCCGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAAGGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCTGTGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTATAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGAAAAGAAATGCAAGAAGCAAAAGCTCGAGTCTGCTGACCCAACTTATGAAACTTGCATGTTACACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCACGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACTGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTTTTGATCGTTGCTTGCAAGACGTGTGGAATAGAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACAGAAAGTGGTCATCCCGAGTTATTTGTATCTCCTAACATCCTCAAAAATGAAAGTATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCAAACTCTAAAGATTTGACATGCATTCTTCAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATGTTAGTGATTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTCAAAGAAATTCTAAATGATAAGTCCATCGATTCTGTGAAAAATGGAGACTCGATTTGTCTGCCATCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGACGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAATTAAGCAAATTTTTATGTCATCATGTACCTTGAAGAAAAAATTTCAGTCTCGTGGTCAGGAGAAGAGGAAGTCATTCAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCTGAACTGAGAAAAGTGAAGGAAGGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACCGTAAGAAGCCGTCACGGAAAGAGTTATCCTCCTTTCAGCCAGTTGTTGAAGATAATTTAGGGCCAGGGAAGCAGCCTCTGGCTAATTTAAGGAAACATGCTTCTGGAGATGTGAAGGAGAGTGCAGAAGTTAAAATAACCACTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGTCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAACCAGAAAGTTTTGAAGTTTGCGCGTACAGTTCAAAACGGTGTTACACATGTAGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAAAAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACACCCTTCTAAGGTTTTGAAAATTTCAAATAGGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTACTATTAATGGGTGGGAATGGCGCAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACATGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGCGTAGATTCTGAAAATAATTCATCCCAGTTATCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGATGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGATAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3498 0.3959 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMMIYGQERSFELAALMPVNPDSKSVSQSHVNDCNKESNHMNLNSEAFSKIISCQMLGGEGCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTICGSDSKSNGVGDVMNLIYEISEDISSQLHMGIMKASRRVMLDGIIGDIIAEFVAEKKCKKQKLESADPTYETCMLHNKMMNKGTSIPSEHEPSHIMDSQACHEISKLSSTSVKLVGSIENFWWSYAAVRKELFDRCLQDVWNRVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKALVLRPGSSVCNVDANIQSGVMVTESGHPELFVSPNILKNESIAEGQRVSCSYPNSKDLTCILQSVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSEVDVSDCRISEMLTGKTFVKEILNDKSIDSVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQTLHDEVLEEWKFSILDSTIKQIFMSSCTLKKKFQSRGQEKRKSFSASKEHLNDATSELRKVKEGTKSSRVPLATGKHTYHRKKPSRKELSSFQPVVEDNLGPGKQPLANLRKHASGDVKESAEVKITTIKRGTAKMIKGKKDTSSKSRSSVNVDNSSHSDQLSLKNKTNQKVLKFARTVQNGVTHVVKSNGKKLSVSKDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNRGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTTINGWEWRKWSQNASPACRAHVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVDGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03876 1165 MobiDBLite consensus disorder prediction 688 716 - -
Trre7g03876 1165 SMART set_7 1026 1149 IPR001214 GO:0005515
Trre7g03876 1165 SUPERFAMILY GYF domain 184 237 IPR035445 -
Trre7g03876 1165 Gene3D SET domain 784 1165 IPR046341 -
Trre7g03876 1165 MobiDBLite consensus disorder prediction 898 924 - -
Trre7g03876 1165 MobiDBLite consensus disorder prediction 882 935 - -
Trre7g03876 1165 MobiDBLite consensus disorder prediction 688 718 - -
Trre7g03876 1165 CDD SET_SETD1 1014 1161 IPR037841 GO:0042800|GO:0048188
Trre7g03876 1165 MobiDBLite consensus disorder prediction 798 812 - -
Trre7g03876 1165 Pfam SET domain 1038 1142 IPR001214 GO:0005515
Trre7g03876 1165 MobiDBLite consensus disorder prediction 747 766 - -
Trre7g03876 1165 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1165 IPR044570 GO:0042800|GO:0051568
Trre7g03876 1165 SMART PostSET_3 1149 1165 IPR003616 -
Trre7g03876 1165 MobiDBLite consensus disorder prediction 977 994 - -
Trre7g03876 1165 ProSiteProfiles SET domain profile. 1026 1143 IPR001214 GO:0005515
Trre7g03876 1165 ProSiteProfiles Post-SET domain profile. 1149 1165 IPR003616 -
Trre7g03876 1165 MobiDBLite consensus disorder prediction 785 812 - -
Trre7g03876 1165 MobiDBLite consensus disorder prediction 975 994 - -
Trre7g03876 1165 Gene3D - 179 251 IPR035445 -
Trre7g03876 1165 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre7g03876 1165 SUPERFAMILY SET domain 1022 1162 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03876 Trre-Chr7 47004286 47011243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03876 1025 1165 C2H2 Transcription Factor Family AT2G23740 34.969 2.93e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g03876 SET 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03876 - - gmx:100805708 1573.14