Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre7g03876 | ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATTCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGATCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGATGATATACGGGCAAGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGACTGCAATAAGGAATCCAATCACATGAATTTAAACTCCGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAAGGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCTGTGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTATAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGAAAAGAAATGCAAGAAGCAAAAGCTCGAGTCTGCTGACCCAACTTATGAAACTTGCATGTTACACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCACGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACTGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTTTTGATCGTTGCTTGCAAGACGTGTGGAATAGAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACAGAAAGTGGTCATCCCGAGTTATTTGTATCTCCTAACATCCTCAAAAATGAAAGTATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCAAACTCTAAAGATTTGACATGCATTCTTCAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATGTTAGTGATTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTCAAAGAAATTCTAAATGATAAGTCCATCGATTCTGTGAAAAATGGAGACTCGATTTGTCTGCCATCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGACGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAATTAAGCAAATTTTTATGTCATCATGTACCTTGAAGAAAAAATTTCAGTCTCGTGGTCAGGAGAAGAGGAAGTCATTCAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCTGAACTGAGAAAAGTGAAGGAAGGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACCGTAAGAAGCCGTCACGGAAAGAGTTATCCTCCTTTCAGCCAGTTGTTGAAGATAATTTAGGGCCAGGGAAGCAGCCTCTGGCTAATTTAAGGAAACATGCTTCTGGAGATGTGAAGGAGAGTGCAGAAGTTAAAATAACCACTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGTCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAACCAGAAAGTTTTGAAGTTTGCGCGTACAGTTCAAAACGGTGTTACACATGTAGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAAAAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACACCCTTCTAAGGTTTTGAAAATTTCAAATAGGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTACTATTAATGGGTGGGAATGGCGCAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACATGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGCGTAGATTCTGAAAATAATTCATCCCAGTTATCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGATGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGATAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG | 3498 | 0.3959 | MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMMIYGQERSFELAALMPVNPDSKSVSQSHVNDCNKESNHMNLNSEAFSKIISCQMLGGEGCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTICGSDSKSNGVGDVMNLIYEISEDISSQLHMGIMKASRRVMLDGIIGDIIAEFVAEKKCKKQKLESADPTYETCMLHNKMMNKGTSIPSEHEPSHIMDSQACHEISKLSSTSVKLVGSIENFWWSYAAVRKELFDRCLQDVWNRVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKALVLRPGSSVCNVDANIQSGVMVTESGHPELFVSPNILKNESIAEGQRVSCSYPNSKDLTCILQSVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSEVDVSDCRISEMLTGKTFVKEILNDKSIDSVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQTLHDEVLEEWKFSILDSTIKQIFMSSCTLKKKFQSRGQEKRKSFSASKEHLNDATSELRKVKEGTKSSRVPLATGKHTYHRKKPSRKELSSFQPVVEDNLGPGKQPLANLRKHASGDVKESAEVKITTIKRGTAKMIKGKKDTSSKSRSSVNVDNSSHSDQLSLKNKTNQKVLKFARTVQNGVTHVVKSNGKKLSVSKDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNRGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTTINGWEWRKWSQNASPACRAHVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVDGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN | 1165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 688 | 716 | - | - | |
Trre7g03876 | 1165 | SMART | set_7 | 1026 | 1149 | IPR001214 | GO:0005515 | |
Trre7g03876 | 1165 | SUPERFAMILY | GYF domain | 184 | 237 | IPR035445 | - | |
Trre7g03876 | 1165 | Gene3D | SET domain | 784 | 1165 | IPR046341 | - | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 898 | 924 | - | - | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 882 | 935 | - | - | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 688 | 718 | - | - | |
Trre7g03876 | 1165 | CDD | SET_SETD1 | 1014 | 1161 | IPR037841 | GO:0042800|GO:0048188 | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 798 | 812 | - | - | |
Trre7g03876 | 1165 | Pfam | SET domain | 1038 | 1142 | IPR001214 | GO:0005515 | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 747 | 766 | - | - | |
Trre7g03876 | 1165 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 | 24 | 1165 | IPR044570 | GO:0042800|GO:0051568 | |
Trre7g03876 | 1165 | SMART | PostSET_3 | 1149 | 1165 | IPR003616 | - | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 977 | 994 | - | - | |
Trre7g03876 | 1165 | ProSiteProfiles | SET domain profile. | 1026 | 1143 | IPR001214 | GO:0005515 | |
Trre7g03876 | 1165 | ProSiteProfiles | Post-SET domain profile. | 1149 | 1165 | IPR003616 | - | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 785 | 812 | - | - | |
Trre7g03876 | 1165 | MobiDBLite | consensus disorder prediction | 975 | 994 | - | - | |
Trre7g03876 | 1165 | Gene3D | - | 179 | 251 | IPR035445 | - | |
Trre7g03876 | 1165 | ProSiteProfiles | GYF domain profile. | 185 | 235 | IPR003169 | GO:0005515 | |
Trre7g03876 | 1165 | SUPERFAMILY | SET domain | 1022 | 1162 | IPR046341 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre7g03876 | Trre-Chr7 | 47004286 | 47011243 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre7g03876 | 1025 | 1165 | C2H2 Transcription Factor Family | AT2G23740 | 34.969 | 2.93e-17 | 85.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Trre7g03876 | SET | 3.4e-22 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre7g03876 | - | - | gmx:100805708 | 1573.14 |