Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03875 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATTCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGATCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGATGATATACGGGCAAGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGACTGCAATAAGGAATCCAATCACATGAATTTAAACTCCGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAAGGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCTGTGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTATAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGAAAAGAAATGCAAGAAGCAAAAGCTCGAGTCTGCTGACCCAACTTATGAAACTTGCATGTTACACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCACGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACTGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTTTTGATCGTTGCTTGCAAGACGTGTGGAATAGAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACAGAAAGTGGTCATCCCGAGTTATTTGTATCTCCTAACATCCTCAAAAATGAAAGTATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCAAACTCTAAAGATTTGACATGCATTCTTCAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATGTTAGTGATTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTCAAAGAAATTCTAAATGATAAGTCCATCGATTCTGTGAAAAATGGAGACTCGATTTGTCTGCCATCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGACGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAATTAAGCAAATTTTTATGTCATCATGTACCTTGAAGAAAAAATTTCAGTCTCGTGGTCAGGAGAAGAGGAAGTCATTCAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCTGAACTGAGAAAAGTGAAGGAAGGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACCGTAAGAAGCCGTCACGGAAAGAGTTATCCTCCTTTCAGCCAGTTGTTGAAGATAATTTAGGGCCAGGGAAGCAGCCTCTGGCTAATTTAAGGAAACATGCTTCTGGAGATGTGAAGGAGAGTGCAGAAGTTAAAATAACCACTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGTCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAACCAGAAAGTTTTGAAGTTTGCGCGTACAGTTCAAAACGGTGTTACACATGTAGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAAAAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGACGGTGTTACAGATGTTGTGAAGTCTAATGGAAAGAAGCTATCAGTGTCAACAGATAATAGTGTTGGTATTAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCGTATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACACCCTTCTAAGGTTTTGAAAATTTCAAATAGGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTACTATTAATGGGTGGGAATGGCGCAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACATGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGCGTAGATTCTGAAAATAATTCATCCCAGTTATCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGATGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGATAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3648 0.3956 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMMIYGQERSFELAALMPVNPDSKSVSQSHVNDCNKESNHMNLNSEAFSKIISCQMLGGEGCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTICGSDSKSNGVGDVMNLIYEISEDISSQLHMGIMKASRRVMLDGIIGDIIAEFVAEKKCKKQKLESADPTYETCMLHNKMMNKGTSIPSEHEPSHIMDSQACHEISKLSSTSVKLVGSIENFWWSYAAVRKELFDRCLQDVWNRVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKALVLRPGSSVCNVDANIQSGVMVTESGHPELFVSPNILKNESIAEGQRVSCSYPNSKDLTCILQSVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSEVDVSDCRISEMLTGKTFVKEILNDKSIDSVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQTLHDEVLEEWKFSILDSTIKQIFMSSCTLKKKFQSRGQEKRKSFSASKEHLNDATSELRKVKEGTKSSRVPLATGKHTYHRKKPSRKELSSFQPVVEDNLGPGKQPLANLRKHASGDVKESAEVKITTIKRGTAKMIKGKKDTSSKSRSSVNVDNSSHSDQLSLKNKTNQKVLKFARTVQNGVTHVVKSNGKKLSVSKDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNDGVTDVVKSNGKKLSVSTDNSVGIKVVKRNNSDGTIHRKTNGRISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNRGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTTINGWEWRKWSQNASPACRAHVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVDGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03875 1215 ProSiteProfiles SET domain profile. 1076 1193 IPR001214 GO:0005515
Trre7g03875 1215 MobiDBLite consensus disorder prediction 688 716 - -
Trre7g03875 1215 MobiDBLite consensus disorder prediction 931 953 - -
Trre7g03875 1215 SUPERFAMILY SET domain 1072 1212 IPR046341 -
Trre7g03875 1215 SMART set_7 1076 1199 IPR001214 GO:0005515
Trre7g03875 1215 MobiDBLite consensus disorder prediction 1027 1044 - -
Trre7g03875 1215 MobiDBLite consensus disorder prediction 688 718 - -
Trre7g03875 1215 MobiDBLite consensus disorder prediction 798 812 - -
Trre7g03875 1215 Pfam SET domain 1088 1192 IPR001214 GO:0005515
Trre7g03875 1215 MobiDBLite consensus disorder prediction 1025 1044 - -
Trre7g03875 1215 ProSiteProfiles Post-SET domain profile. 1199 1215 IPR003616 -
Trre7g03875 1215 MobiDBLite consensus disorder prediction 747 766 - -
Trre7g03875 1215 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1215 IPR044570 GO:0042800|GO:0051568
Trre7g03875 1215 SUPERFAMILY GYF domain 184 237 IPR035445 -
Trre7g03875 1215 Gene3D SET domain 919 1215 IPR046341 -
Trre7g03875 1215 Gene3D - 179 251 IPR035445 -
Trre7g03875 1215 CDD SET_SETD1 1064 1211 IPR037841 GO:0042800|GO:0048188
Trre7g03875 1215 SMART PostSET_3 1199 1215 IPR003616 -
Trre7g03875 1215 MobiDBLite consensus disorder prediction 785 812 - -
Trre7g03875 1215 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03875 Trre-Chr7 47004286 47011243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03875 1075 1215 C2H2 Transcription Factor Family AT2G23740 34.969 3.36e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g03875 SET 3.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03875 - - gmx:100805708 1552.73