Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03874 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATTCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGATCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCCTCTTCTTCTCAGGATATGATGATATACGGGCAAGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGACTGCAATAAGGAATCCAATCACATGAATTTAAACTCCGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAAGGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCTGTGGATCAGATTCCAAAAGCAATGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTATAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGAAAAGAAATGCAAGAAGCAAAAGCTCGAGTCTGCTGACCCAACTTATGAAACTTGCATGTTACACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCACGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACTGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTTTTGATCGTTGCTTGCAAGACGTGTGGAATAGAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTTCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACAGAAAGTGGTCATCCCGAGTTATTTGTATCTCCTAACATCCTCAAAAATGAAAGTATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCAAACTCTAAAGATTTGACATGCATTCTTCAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGTTGCAGGTTGATGTTAGTGATTGCCGTATCTCAGAGATGCTTACCGGTAAAACATTTGTCAAAGAAATTCTAAATGATAAGTCCATCGATTCTGTGAAAAATGGAGACTCGATTTGTCTGCCATCATCTGGAAACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGACGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAATTAAGCAAATTTTTATGTCATCATGTACCTTGAAGAAAAAATTTCAGTCTCGTGGTCAGGAGAAGAGGAAGTCATTCAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCTGAACTGAGAAAAGTGAAGGAAGGAACAAAAAGTTCCAGAGTTCCGCTGGCGACTGGAAAGCATACATATCACCGTAAGAAGCCGTCACGGAAAGAGTTATCCTCCTTTCAGCCAGTTGTTGAAGATAATTTAGGGCCAGGGAAGCAGCCTCTGGCTAATTTAAGGAAACATGCTTCTGGAGATGTGAAGGAGAGTGCAGAAGTTAAAATAACCACTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGTCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAACCAGAAAGTTTTGAAGTTTGCGCGTACAGTTCAAAACGGTGTTACACATGTAGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAAAAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGACGGTGTTACAGATGTTGTGAAGTCTAATGGAAAGAAGCTATCAGTGTCAACAGATAATAGTGTTGGTATTAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCGTATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGGTGTTACATCCTCACACCCTTCTAAGGTTTTGAAAATTTCAAATAGGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTACTATTAATGGGTGGGAATGGCGCAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACATGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGCGTAGATTCTGAAAATAATTCATCCCAGTTATCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGATGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGATAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCGGATCAATGAATTAG 3654 0.3957 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMMIYGQERSFELAALMPVNPDSKSVSQSHVNDCNKESNHMNLNSEAFSKIISCQMLGGEGCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTICGSDSKSNGVGDVMNLIYEISEDISSQLHMGIMKASRRVMLDGIIGDIIAEFVAEKKCKKQKLESADPTYETCMLHNKMMNKGTSIPSEHEPSHIMDSQACHEISKLSSTSVKLVGSIENFWWSYAAVRKELFDRCLQDVWNRVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKALVLRPGSSVCNVDANIQSGVMVTESGHPELFVSPNILKNESIAEGQRVSCSYPNSKDLTCILQSVQNELHFSAKASLADYVRSVVEKEVNQLIPSLEKGKFSELQVDVSDCRISEMLTGKTFVKEILNDKSIDSVKNGDSICLPSSGNHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQTLHDEVLEEWKFSILDSTIKQIFMSSCTLKKKFQSRGQEKRKSFSASKEHLNDATSELRKVKEGTKSSRVPLATGKHTYHRKKPSRKELSSFQPVVEDNLGPGKQPLANLRKHASGDVKESAEVKITTIKRGTAKMIKGKKDTSSKSRSSVNVDNSSHSDQLSLKNKTNQKVLKFARTVQNGVTHVVKSNGKKLSVSKDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNDGVTDVVKSNGKKLSVSTDNSVGIKVVKRNNSDGTIHRKTNGRISLEKLNATNKVSKSKRKHQTDGVTSSHPSKVLKISNRGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTTINGWEWRKWSQNASPACRAHVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVDGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03874 1217 Gene3D SET domain 921 1217 IPR046341 -
Trre7g03874 1217 MobiDBLite consensus disorder prediction 749 768 - -
Trre7g03874 1217 ProSiteProfiles Post-SET domain profile. 1201 1217 IPR003616 -
Trre7g03874 1217 SUPERFAMILY SET domain 1074 1214 IPR046341 -
Trre7g03874 1217 CDD SET_SETD1 1066 1213 IPR037841 GO:0042800|GO:0048188
Trre7g03874 1217 Pfam SET domain 1090 1194 IPR001214 GO:0005515
Trre7g03874 1217 MobiDBLite consensus disorder prediction 787 814 - -
Trre7g03874 1217 MobiDBLite consensus disorder prediction 690 718 - -
Trre7g03874 1217 MobiDBLite consensus disorder prediction 933 955 - -
Trre7g03874 1217 SUPERFAMILY GYF domain 184 237 IPR035445 -
Trre7g03874 1217 ProSiteProfiles SET domain profile. 1078 1195 IPR001214 GO:0005515
Trre7g03874 1217 MobiDBLite consensus disorder prediction 1029 1046 - -
Trre7g03874 1217 MobiDBLite consensus disorder prediction 690 720 - -
Trre7g03874 1217 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1217 IPR044570 GO:0042800|GO:0051568
Trre7g03874 1217 Gene3D - 179 251 IPR035445 -
Trre7g03874 1217 SMART set_7 1078 1201 IPR001214 GO:0005515
Trre7g03874 1217 MobiDBLite consensus disorder prediction 800 814 - -
Trre7g03874 1217 SMART PostSET_3 1201 1217 IPR003616 -
Trre7g03874 1217 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre7g03874 1217 MobiDBLite consensus disorder prediction 1027 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03874 Trre-Chr7 47004286 47011243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03874 1077 1217 C2H2 Transcription Factor Family AT2G23740 34.969 3.46e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g03874 SET 3.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03874 - - gmx:100805708 1547.72