Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03864 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCAGGAAATAATGGAGGATCCTTCTTTATGTCTTCATCAGTGGCATTTGAACTCTATTGATGAGTCTAACTCAATGCCAATAGCTTCTGCTTTTGGAGATACTTTACAACACCATTCATATATTTATCCAAACTTTAATCACCGAACTTCAGTTCAAACTGCTCAGACGCTAGATACTCAATTTGTTTCGTACCCGAATCTTGTTTCATTTGTCGATTCGAATCACTTAAATCAGTTGGGAGTAGTGACGCCCAATGATGAGATGGTTTGTCCTCAAAACAACAGCGCAGCTCTTTCTGACATGATACCTCAAGGAACCTTTGAGGCCAAAAAGTTGGCGACACGTCCTAAACTCTCTCTACCTCAAGACCACATAATAGCTGAAAGAAAGCGGCGTGAAAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCAGGACTACAAAAGATGGACAAAGCTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAATTGCAAGAGAAGGTGAGGGATCTTGAGGAGGAACAGAACATGAAGAAAAGCGTGGAAACTGTGGTGGTTGTGAAGAAATCTCAACTACGCGATGATGTTGAAAACTCTTCTGCAGAATATGGCGGTCCCTTTGACGAGGAGCTACCAGAAATTGAAGCAAGATTTTGTGAAAGAAATGTCCTCATAAGAATTCACTGTGAGAAAAGCAATGGAGTTGTGGAAAAAACAATCCATCAAATTGAGAAACTTCATCTAAAAGTCACCAATAGCAGTGTCATGACATTTGGAAAATGTGCACTTGATATAACAATTATGGCTCAGATGGATATGGAATTTTACATGACAGTGAAAGATCTTGTGAGAAACCTACGCTCGGCTTTTGCGTCTTTCATCTGA 933 0.4041 MENISFIRGFPDQEIMEDPSLCLHQWHLNSIDESNSMPIASAFGDTLQHHSYIYPNFNHRTSVQTAQTLDTQFVSYPNLVSFVDSNHLNQLGVVTPNDEMVCPQNNSAALSDMIPQGTFEAKKLATRPKLSLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKATVLGDAIKYLKKLQEKVRDLEEEQNMKKSVETVVVVKKSQLRDDVENSSAEYGGPFDEELPEIEARFCERNVLIRIHCEKSNGVVEKTIHQIEKLHLKVTNSSVMTFGKCALDITIMAQMDMEFYMTVKDLVRNLRSAFASFI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03864 310 Gene3D - 133 205 IPR036638 GO:0046983
Trre7g03864 310 CDD bHLH_AtNAI1_like 131 205 - -
Trre7g03864 310 Coils Coil 170 197 - -
Trre7g03864 310 PANTHER BHLH TRANSCRIPTION FACTOR 23 307 - -
Trre7g03864 310 SMART finulus 137 186 IPR011598 GO:0046983
Trre7g03864 310 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Trre7g03864 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 194 IPR036638 GO:0046983
Trre7g03864 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03864 Trre-Chr7 46931417 46932880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03864 8 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.870 3.99e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g03864 HLH 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03864 - - vun:114179595 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03864 7 46931417 46932880 Trre7g03864 7 46931417 46932880 ECH
Trre7g03864 7 46931417 46932880 Trre3g00297 3 1968128 1970155 PCT