Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03839 ATGTTAATGGCTGGTCAGAGTACCGATACTGATATCCTGTGTTTAAAATCCATTAAGAATTCCTTGGAAGACCCAAATAATTACTTAGAAAATTGGAACTTCAGCAACAAAACCGAAGGTTTCATATGTTGGTTTACTGGTGTTGAATGCTGGCATCCTGATGAGAATAGAGTACTAAATCTCAAACTATCTAACATGGGGTTGAAGGGCCAGTTTCCGCGTGGTCTTCAATACTGCTCTTCAATTACGGGCGTAGACCTTTCAGTCAACAAGCTCTCAGGATCCATCCCATCTGATATATCAGCCATACTCAAATATGTGACTGTCATTGATCTCTCTAATAACAAATTCACCGGTGAAATTCCGATAGATTTTGCACACTGCACTTACCTGAATAACCTTAAGCTTGACAACAACATGTTAAGCGGTCATATCCCCCGAGAATTTTCCATGCTTAACAGGCTTAAAGTGTTTGATTTTTCTAACAATGATTTGTCAGGGCCAGTGCCGATGTTCCAAAGAGTAGTAGTTTCTAATTATGCTAATAATAATAAACTTTGTGGAGGAGTGTCTTTGCCACCCTGCTCCGGTGACAAGTTCCATCAAGCATTAAAGGGTGGCCTCATTGTTGGTTTTGCATCATCATTGACTTGTTATATTGTGGTTACTTATTACATCTCCTACTCCAATTTTGTACCTCATGAGCAATTGAAAAAGAAGAAGAAAAATAATAGAAACAGCCACCTAAACAAGGTTAATGAGCTAGGCAAATATATTTCCTCCATCACAAGCAGGGGGACACAAAGCATAGCTAATCATATGCATGAATTGCTACATCCACAACTGGTGGAGAAAGGAAGCAAAGAGATTTCTATACTAATGGAGAGACTGACTTCAACAATATGGTTGGAAGAACTGCGCGACGCAACCAATTGTTTTTCCGTGGACAATGCCATTGGGGTAGGAAAGATGGGAATGATGTACCAAGGATTTCTGCCTAATGGACACTTACTAGCTGTTAAGAGACTCTTTGACTCTCGGTTATTTAAACGGCAATTCCTTTTGGAAACAGCAATTTTGTGCAAGTACCGACACAAAAATATAGTTCCCCTACTTGGGTTTTGCATTGAAGGAAATGAAAGGCTTTTGGCATATGCATACATGTCAAATGGAAGGCTTTCCAAATGGTTGCATCCTTTGGAAAGTGAAGTCATAAGATTGAAATGGCATCAGAGGGTCGAAATTGCACTTGGAATAGCAAGAGGATTATCATGGCTACATCATACATGTGATTTGGGCATAGTGCATTTTAATATATGTTCAGAATGCATATTGCTAGACGATAATTTTGAACCCAAAATATCCAATTTTGGAGAAGCCAAATTTATGAATCCCAACATTGAAGATCATCTAGGGGTGATATTTAAAGTGAATGATGGGAAGAAGGATGTTTATGATTTTGGAAGTGTACTTTTTGAATTGATTACAGGAAAGACGTATAATGAATTATCGCGTTCATATGACACTTACAATATTTGCAGTAACCCTTTGAGTTTTTATAATGTAATTGAAAAGTCTGTGACTGGGGAAGGACTTGAAAATGAAGTTTGTACTCTCCTAAAGATTGCTTGTGAGTGTGTTCATCCTTTCCCCGAACAAAGGCCAACAATGCTTGAAGTTTACAAGAATATGAGCAATGTAAGGAAAGATCGAAACGACTATGGTGAAGAATCAGATACATTAAGGGTATTATAG 1755 0.3812 MLMAGQSTDTDILCLKSIKNSLEDPNNYLENWNFSNKTEGFICWFTGVECWHPDENRVLNLKLSNMGLKGQFPRGLQYCSSITGVDLSVNKLSGSIPSDISAILKYVTVIDLSNNKFTGEIPIDFAHCTYLNNLKLDNNMLSGHIPREFSMLNRLKVFDFSNNDLSGPVPMFQRVVVSNYANNNKLCGGVSLPPCSGDKFHQALKGGLIVGFASSLTCYIVVTYYISYSNFVPHEQLKKKKKNNRNSHLNKVNELGKYISSITSRGTQSIANHMHELLHPQLVEKGSKEISILMERLTSTIWLEELRDATNCFSVDNAIGVGKMGMMYQGFLPNGHLLAVKRLFDSRLFKRQFLLETAILCKYRHKNIVPLLGFCIEGNERLLAYAYMSNGRLSKWLHPLESEVIRLKWHQRVEIALGIARGLSWLHHTCDLGIVHFNICSECILLDDNFEPKISNFGEAKFMNPNIEDHLGVIFKVNDGKKDVYDFGSVLFELITGKTYNELSRSYDTYNICSNPLSFYNVIEKSVTGEGLENEVCTLLKIACECVHPFPEQRPTMLEVYKNMSNVRKDRNDYGEESDTLRVL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03839 584 Gene3D Ribonuclease Inhibitor 8 197 IPR032675 -
Trre7g03839 584 Pfam Leucine rich repeat N-terminal domain 9 51 IPR013210 -
Trre7g03839 584 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 196 - -
Trre7g03839 584 Gene3D Transferase(Phosphotransferase) domain 1 388 582 - -
Trre7g03839 584 Gene3D Phosphorylase Kinase; domain 1 273 387 - -
Trre7g03839 584 Pfam Protein tyrosine and serine/threonine kinase 315 563 IPR001245 GO:0004672|GO:0006468
Trre7g03839 584 SUPERFAMILY L domain-like 9 173 - -
Trre7g03839 584 FunFam Nuclear pore complex protein NUP107 8 171 - -
Trre7g03839 584 SUPERFAMILY Protein kinase-like (PK-like) 292 562 IPR011009 -
Trre7g03839 584 ProSiteProfiles Protein kinase domain profile. 313 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03839 Trre-Chr7 46555635 46557971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03839 7 579 Receptor kinase-like Gene Family AT3G28450 34.718 1.36e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre7g03839 PK_Tyr_Ser-Thr 7.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03839 - - psat:127106772 820.846