Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03818 ATGTCTTCTGATCCAACAACTCCAAAGTATGATGTGTTCCTCAGCTTTAGAGGAGAAGATACTCGTGACAACTTCACCAGTCACCTTTATGCAGAATTGCGTAGGCAAAACATTGAAACATTCATAGATTATAGGCTTGAGAGAGGTGATGAGATTAACTCATCCCTAGTCGAAGCAATTGAAAAATCAAAGATTTATGTGATCATTTTGTCAGAACACTATGCTTCTTCCAGTTGGTGCTTAGATGAACTGATAGAGGTATTGAAATGTAAGGAGGAGAGATATGGAAGGGAAGTGATACCGGTGTTCTATAAGGTGGATCCGAGAAATGTCAGGCATCAGAGACAGAGTTATGCAGACGATTTGGTTAAGCATCATCAACGATTTGGTGGCAAATTGGACGCGTGGAAGGCTGCTCTAACCAAAGTAGCTGGACTCTCTGGCTGGGATTCACATGTAACAAGACCTGAAAGCACACTTGTTACAGAGATTGTGAAAGACATTGCAAAAAAATTGAAATGTTGTGTCTCAAGTGATTATGAAGGAATGACAGGAATTGACAACCATATTGAAAATATTCAATCCTTGTTGCTCCTCGAGTTGCCGACTGTTCGAATCATAGGAATATGGGGCATGGGAGGGATAGGCAAAACAACAATTGCAAATGCAATCTTTGAAAAACTTGCAACTCATTTCAGTTCCAAAAGCATCATTCGAAATGTTCAACAAGAAATAGAAAGAGTTGGACTAGACCATGTAAAAAGCAAATACTTATCACAACTTCTAAATGAAACAATTACATCCTCTGAATCCAATTCTTACAGTCAAAGGCTGAAACGGACAAAGGGTCTTATTGTTTTTGATGATGTGAAAGATGCTGATCAACTTAAAGATTTAATTGGAACACATCATAAATTTGGCCAGGGGAGTAGAATCATTGTGACTAGTAGAGATAGGCAAGTGCTTGAGAATGCCAATGCTCACGAAATATATCAAGTTAGGGAAATGGATGATCAAGATTCTCTACAACTCTTCTGTTCATTTGCCTTTAAACAAAGCCATCCAGAAGAATCTTTTGCGAGCTTAACAGAAAAGGTTTTAGATTATGCTCAAGGGCTTCCATTAGCTCTCAAAGTTTTGGGCTCATTGCTTTATGGCAGAACAAAGGAAGCATGGGAAAGTGAGCTGCGAAAGCTCGAAAAGCTTCCCGATCGTGAAGTTTTTAGATTGCTGAAGTTAAGTTATGATGGACTTGACGACGAACAAAAAGATATATTTCTTGACATAGCTTGTTTCCATATAGGAAAATTGAAGGAAATTATAGCAGAAATGTCGGATTGTTGTGGTTTCTCCACTTGCATTGGATTGGATGTTCTTGAAGATAGGTGTCTTATATCTATTTCAAAAGGTCAAGTTTGGATGCATGATCTAATACGAGATATGGGACGTCAAATTGTTAAGCTTCAATGTGTTGATGATCCTGCGAAACGTAGTCGATTATGGAATGCTAGTGATATTTACGATGTTTTAAGCAAGAACAAGGGAAAAGGAACAGACGCAATCCAGTGTATATTCCTACATGTGGATGAAATAAAGAAAGTTCAACTACATGCTGATACATTTAAGAAAATGCATAATCTTAGAATTATCAATTTCTACGATAGCTTTACGAAGGACTCAAATGTAACCTTTGATGGGTTTCTTATGAGTTTTCCTAATGATTTAAAATTTCTTCAATGGACTCACTTCCCTCAAAGATCTTTGCCACAAGACTTTTGCCCAAAAAATCTTGCTATACTTGATATGTCTTATAGCAATCTTGAACAACTTTGGGAGGGGGATCAGGATTTACCAAACTTGAAAAGGCTTAACCTTAAATATTCTAAGATGCTGAAAGGACTACCAGACCTCTCTTTGTTTCCAAATATTGAAGCAGTAATTCTTAGTGGCTGTACAAGTTTGATACAAGTTTACTCATCTAGCTTCCTCGACAAGCTTAACTGGTTATGTTTAGATGGATGTACTGAACTCACGAGTGTAAACATTTGTAGCAATATTTTGTCGAGATCATCTGGATTAGTTGCTCTCCATCGTTGTCAAAACCTTAAAACACTTTTAATCAACAGTAGAACTGATGTGGTTCAATCAGACAGTTGCCCTCCTTTTAATTGTTATTATGACTTTCGGTCAGTATGTGTTTTTGAAGATGGAATAAGAATACAGTCTGATCGTGCGGGGGTTTATGAGATTTGGGAATCATTTTCAGACACTCGTTCAGGAAAAAGAATCAATGAGTTTTGTTGGTTAGATGTTTCGTGTTGTATGTCCCTAACATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAAGAAGGCTTTGTCTCAGTTATTGTTTGCAGTTGGAGGAGTTACCTGAAATCAAGGAGACTATAGAAAATTTAAAAGTGCTCGCCTTAGACGGAACATCAATAAAAGAACTACCTTCATCCTTGCACCTTTTGGTCGGACTTGAAGAATTGAACTTGCAAGATTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAATCTTAGTAAACTCCTCAAGTTAAATCTTACCTTTTGTGCATCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGACAGAACTCAATTTTGATGGTTGCTCAATGCTTGCGACCTTTCCAGAAATCTTGGAGCCTGCAGAAAGTTTTACTTGCATTGACTTAACAGACACAGCAGTAAAAGAACTACCTTCATCCTTGCACCTTTTGGTTGGACTTGAAGAATTGAACTTGCAAGGTTGCAAAAAGCTTAAGACTATTCCATCTTCCATTGGAAATCTTAGTAAACTCCTCAAGTTAAACCTTGTCTTTTGTGAATCACTTGAAACTTTTCCGATCAGCATTTTCAAATTGAAGTTGACAGAACTCAATTTGTATGGTTGCTCAATGCTTGCGACCTTTCCTGAAATATCAAATGACATTGGCCGCTTGTCATCCTTGATTGAACTTTCACTGCAAGGAAACAATATTGTGAACCTTCCTGAGAGTCTGGCTCATCTATCAAGTTTGAAATCACTTAATTTTAGTGATTGCAAATTGCTTGAATGTGTACCAAAGCTTCCACCAAATCTAAAGAAAGTTTTGGCATTTGATTGCCCTTCCATTAAGAGAATGATGCTAAACTCAAGGTCTGATTCGGAAAAAGGTAGCTTCAAATTTCATCTGACCAATAGTCAAGAACTAGATGCTACTTGTTTGAGTAATATTGAAGATGAAGCATATATTAAGATCAATGATGATGCATATAGGTCAATGATCTTCTGTTTTCCCGGAAGTGCGGTTCCTGATTGGTTCTCTTACCGATGCCAGGGACATTCAATAACTATAAGAAACGATCATTTAAATTTGTACCGGAGAAACAAACTTATTGGTTTCGCTCTGTGTGTGGTTTTTGGACCTGACTTTCCATACAAATTCTCTTGGTTTGATCCTGTCTTTAGATACGAATTAAAATTTGAATCTGATGGTCAAACACACTTTCATTCCAACAACAAGCTTGAACTTGAATCTGTTACGCTAGGTTATAGAAGATTTTCCCAACATCACACATTGCTGTGGAAGTATGAATTGGACTTGCCAAGAATTGATGTCGAGACTATCACTTTTGAGATCCTAGATGAGCATTATCGTCCCTTAAGTTTTCCAAGAACCATGACGGTGAAAGAATGTGGAATATGTCCTCTTTATAGCAAACAAAATGATGATGATGATGATGATGATGATGATAGCATTGAAGAACCAAGTGGGAATGCAGTGTGTTCGGTAGACCCCTCCTCCTCAAGTGACAACTACACACAAAATAAAAGAAGAAAAAAATAA 3894 0.3731 MSSDPTTPKYDVFLSFRGEDTRDNFTSHLYAELRRQNIETFIDYRLERGDEINSSLVEAIEKSKIYVIILSEHYASSSWCLDELIEVLKCKEERYGREVIPVFYKVDPRNVRHQRQSYADDLVKHHQRFGGKLDAWKAALTKVAGLSGWDSHVTRPESTLVTEIVKDIAKKLKCCVSSDYEGMTGIDNHIENIQSLLLLELPTVRIIGIWGMGGIGKTTIANAIFEKLATHFSSKSIIRNVQQEIERVGLDHVKSKYLSQLLNETITSSESNSYSQRLKRTKGLIVFDDVKDADQLKDLIGTHHKFGQGSRIIVTSRDRQVLENANAHEIYQVREMDDQDSLQLFCSFAFKQSHPEESFASLTEKVLDYAQGLPLALKVLGSLLYGRTKEAWESELRKLEKLPDREVFRLLKLSYDGLDDEQKDIFLDIACFHIGKLKEIIAEMSDCCGFSTCIGLDVLEDRCLISISKGQVWMHDLIRDMGRQIVKLQCVDDPAKRSRLWNASDIYDVLSKNKGKGTDAIQCIFLHVDEIKKVQLHADTFKKMHNLRIINFYDSFTKDSNVTFDGFLMSFPNDLKFLQWTHFPQRSLPQDFCPKNLAILDMSYSNLEQLWEGDQDLPNLKRLNLKYSKMLKGLPDLSLFPNIEAVILSGCTSLIQVYSSSFLDKLNWLCLDGCTELTSVNICSNILSRSSGLVALHRCQNLKTLLINSRTDVVQSDSCPPFNCYYDFRSVCVFEDGIRIQSDRAGVYEIWESFSDTRSGKRINEFCWLDVSCCMSLTCLPAELLNLKFLRRLCLSYCLQLEELPEIKETIENLKVLALDGTSIKELPSSLHLLVGLEELNLQDCTKLKTIPSSIGNLSKLLKLNLTFCASLETFPSSIFKLKLTELNFDGCSMLATFPEILEPAESFTCIDLTDTAVKELPSSLHLLVGLEELNLQGCKKLKTIPSSIGNLSKLLKLNLVFCESLETFPISIFKLKLTELNLYGCSMLATFPEISNDIGRLSSLIELSLQGNNIVNLPESLAHLSSLKSLNFSDCKLLECVPKLPPNLKKVLAFDCPSIKRMMLNSRSDSEKGSFKFHLTNSQELDATCLSNIEDEAYIKINDDAYRSMIFCFPGSAVPDWFSYRCQGHSITIRNDHLNLYRRNKLIGFALCVVFGPDFPYKFSWFDPVFRYELKFESDGQTHFHSNNKLELESVTLGYRRFSQHHTLLWKYELDLPRIDVETITFEILDEHYRPLSFPRTMTVKECGICPLYSKQNDDDDDDDDDSIEEPSGNAVCSVDPSSSSDNYTQNKRRKK 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03818 1297 SMART till_3 9 146 IPR000157 GO:0007165
Trre7g03818 1297 MobiDBLite consensus disorder prediction 1256 1297 - -
Trre7g03818 1297 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 174 - -
Trre7g03818 1297 Gene3D - 174 333 IPR027417 -
Trre7g03818 1297 Gene3D Ribonuclease Inhibitor 746 900 IPR032675 -
Trre7g03818 1297 SUPERFAMILY "Winged helix" DNA-binding domain 406 510 IPR036390 -
Trre7g03818 1297 SUPERFAMILY L domain-like 768 1066 - -
Trre7g03818 1297 FunFam Disease resistance protein (TIR-NBS-LRR class) 337 419 - -
Trre7g03818 1297 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
Trre7g03818 1297 Pfam TIR domain 9 184 IPR000157 GO:0007165
Trre7g03818 1297 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 706 IPR044974 GO:0006952
Trre7g03818 1297 ProSiteProfiles TIR domain profile. 8 172 IPR000157 GO:0007165
Trre7g03818 1297 PRINTS Disease resistance protein signature 277 291 - -
Trre7g03818 1297 PRINTS Disease resistance protein signature 370 384 - -
Trre7g03818 1297 PRINTS Disease resistance protein signature 856 872 - -
Trre7g03818 1297 PRINTS Disease resistance protein signature 206 221 - -
Trre7g03818 1297 ProSiteProfiles Leucine-rich repeat profile. 1004 1026 IPR001611 GO:0005515
Trre7g03818 1297 SUPERFAMILY L domain-like 539 854 - -
Trre7g03818 1297 Gene3D - 335 419 IPR042197 -
Trre7g03818 1297 Gene3D Ribonuclease Inhibitor 901 1105 IPR032675 -
Trre7g03818 1297 Gene3D Ribonuclease Inhibitor 521 717 IPR032675 -
Trre7g03818 1297 Gene3D - 5 173 IPR035897 -
Trre7g03818 1297 Pfam NB-ARC domain 188 401 IPR002182 GO:0043531
Trre7g03818 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 429 IPR027417 -
Trre7g03818 1297 Pfam Leucine Rich Repeat 596 615 IPR011713 -
Trre7g03818 1297 Pfam C-JID domain 1114 1257 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03818 Trre-Chr7 46326098 46331987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03818 786 960 WRKY Transcription Factor Family AT4G12020 32.768 4.06e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03818 - - tpra:123916959 1817.74