Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03785 ATGGCTTCCGAATCCTCTAGCATCTCTGCTACATCACAAGATCATGGTGATTCCAACTCAAAAAAAGTGGTGGTCACGAAGGAGATCGAACAAGATCAATCATCAAACTCAACTTCAAAAAACCCTGTTGATTTCGTCAAACTATCGAAAGACGATTCAGTTCCTATGTCGAATGTGCAAGAGCACAATTTCTTTAGTCCTGTTCAAGTTGGTTCATCATCTCGTTTTCCTATTTGCAACAATGAAAAGAAAGATGAGAACGAGAATGAAGAAAAAAATTCGGATTCAAGATCTTTTCCGTGCTCTTTTTGCAAGAGACGATTTTCTACTTCACAAGCGTTGGGAGGACACCAGAACGCTCATAAGGCGGAACGTGCCTCAGAAAAACAACGTAAACAAAGGGCACTCGGGACTAGAATGGAGTCCATGATTCAAAAACCACATCCTAGGTTTACCCCACTTAGTATTGGGTATAGTCATGGTGCTTTGTGTTTGCAAGAGATAGTAAACCCTTCTCTTGTGTCATTGAGAAATATGGGGGGTGGTAATAGCGGGATTGGAAATTTAAGCATTGGTGATGCAACTACTTTAAAGATTGAAGATAGTTCAAAAAATAGATTAAAGATTGAGGATGGTTCAAAAAATAAAATTAGTGATATTCTAAATTTTGGAGAGTCTTCTACAAATATTGCTACAAGTTTAAACTCAAACATAGAGAAGAAAAATATTGTGGCCCTTACTTCTACTAAGGATGATATTCATCAATCAAAGTCCAACATTGAAGAAGAAACCTCCAATAAGTCCGATGAATCATCTGGACTTGATTTGTCACTTAAGCTTTAA 843 0.3749 MASESSSISATSQDHGDSNSKKVVVTKEIEQDQSSNSTSKNPVDFVKLSKDDSVPMSNVQEHNFFSPVQVGSSSRFPICNNEKKDENENEEKNSDSRSFPCSFCKRRFSTSQALGGHQNAHKAERASEKQRKQRALGTRMESMIQKPHPRFTPLSIGYSHGALCLQEIVNPSLVSLRNMGGGNSGIGNLSIGDATTLKIEDSSKNRLKIEDGSKNKISDILNFGESSTNIATSLNSNIEKKNIVALTSTKDDIHQSKSNIEEETSNKSDESSGLDLSLKL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03785 280 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Trre7g03785 280 MobiDBLite consensus disorder prediction 251 280 - -
Trre7g03785 280 MobiDBLite consensus disorder prediction 112 140 - -
Trre7g03785 280 SUPERFAMILY beta-beta-alpha zinc fingers 96 126 IPR036236 -
Trre7g03785 280 MobiDBLite consensus disorder prediction 1 98 - -
Trre7g03785 280 Pfam C2H2-type zinc finger 99 123 - -
Trre7g03785 280 MobiDBLite consensus disorder prediction 1 19 - -
Trre7g03785 280 MobiDBLite consensus disorder prediction 29 44 - -
Trre7g03785 280 MobiDBLite consensus disorder prediction 79 95 - -
Trre7g03785 280 MobiDBLite consensus disorder prediction 254 269 - -
Trre7g03785 280 Gene3D Classic Zinc Finger 80 148 - -
Trre7g03785 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Trre7g03785 280 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 132 IPR044246 GO:0009788
Trre7g03785 280 MobiDBLite consensus disorder prediction 53 78 - -
Trre7g03785 280 MobiDBLite consensus disorder prediction 121 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03785 Trre-Chr7 45949101 45950036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03785 87 133 C2H2 Transcription Factor Family AT5G01860 60.417 2.09e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g03785 zf-C2H2_6 5.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03785 - - tpra:123915384 435.261