Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03768 ATGGAACAAGAAAATAACCATAATCTAAGTGTGTCTATGGAAGATTTAGGTTTCAATACTGGTTGTAACATGAAGGGAAAATTGAGGCAAAAGCATTATGATGATGATGATGATGTTGGTCCAAAAGTGTTCAAATCCAAGAACCTTGAGACAGAAAGAAAGAGAAGGGAGAAACTTGGTTCAAGACTTTTGGTGCTTAGGTCTCTAGTACCAATCATCACAAGTATGAACAAGGCAAGCATTATTGAGGATGCTATCACTTATACAAGGAAGTTGCAAAATGAAGTTGAGATTCTTACAAATGAGCTTGGTGGATTGGATGAAATGAGAAAGAAAAAATCAGAGCAAAAAACATGTGAATCTTCTGCTGCTGGGGAAAAGATCAATATATCTTGGATAGAGGAAGAGATCCAGGTAGCAAAAATTGATGGGAATAATTTATGGGTGAAGATGATCATTGAGAATAAGAGAGGAAGGTTCAAGAAATTAGTAGAGGACTTGGATAATTCAAACATTGAAATGATTGATGTCAGTGTTACAACTATGGAAGGAGCATATCTTATTACAGCCACATTAAAGGGTATGAGTGGTGAACCAATTGAGCTTTATCAAATTCCAACTATTATGAAGTTCAAGTAG 639 0.3552 MEQENNHNLSVSMEDLGFNTGCNMKGKLRQKHYDDDDDVGPKVFKSKNLETERKRREKLGSRLLVLRSLVPIITSMNKASIIEDAITYTRKLQNEVEILTNELGGLDEMRKKKSEQKTCESSAAGEKINISWIEEEIQVAKIDGNNLWVKMIIENKRGRFKKLVEDLDNSNIEMIDVSVTTMEGAYLITATLKGMSGEPIELYQIPTIMKFK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03768 212 Pfam Helix-loop-helix DNA-binding domain 47 93 IPR011598 GO:0046983
Trre7g03768 212 Coils Coil 89 109 - -
Trre7g03768 212 SMART finulus 49 98 IPR011598 GO:0046983
Trre7g03768 212 Gene3D - 41 113 IPR036638 GO:0046983
Trre7g03768 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Trre7g03768 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 104 IPR036638 GO:0046983
Trre7g03768 212 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 21 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03768 Trre-Chr7 45783886 45785413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03768 44 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 43.949 1.12e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g03768 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03768 - - mtr:25493240 254.218