Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03763 ATGGAGTCTCATCTCCCTGAACACTTCAAATGTCCAATTTCTCTCGAAATAATGTCTGACCCTGTTATCCTCTCTTCCGGTCACACATTCGATCGTCCTTCAATCCAACGGTGGCTAGACGATGGTCATAGAACTTGTCCAATTACCAAATTACCCCTCCCTGATAATCCTACCCTCATCCCTAATCACGCTCTTCGTAGTTTAATCTCTACCTACACTCTCCTTCCACCACTTCACCAAATCATTTCCCAACCTGAAACCCTAATTTCAATTTTAACTAAATCTTCTTCTTCTTCCGATTCCAAAATCGACTCGCTCCGTCAACTCGCTCGTCTTTCTAAACGCGACGCCAATTTCCGTCGTCGTCTTGTTGATTCCGGCGCTGTCTCCGCCGTTCTTTTCTGTCTTGATTCTTCTTCCGGTGAAACTAAGTTGCAGGAGAAGGCTTTATCTCTTCTTCTTAATCTTAGTCTTGATGATGATAGTAAGATTGGACTTGTTGCTGAAGGTGCAATTGATCGTGTCGTTGCGTTTCTTCTCCGGGAAGCTTCGTCGGATTGTTGTGCTCTCGCCGCGACGATAATCACGAGTCTTGCTGTTGTGGAGGTGAACAAGGCGACTATTGGAGCTTTTCCGGGGGCAATTGAAGCTCTGGTGGCGATTCTTCGTGATGGGAAGGGCAGAGAGAGGAAAGAAGCTGCTACCGCGCTTTATGCGCTTTGCTGTTTTCGCGATAATCGAAAAAGGGCGGTGGATTGTGGCGCGGTGCCGATTTTGATGAGGAGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTCTTTTGGTTAAGTGTAAGGAAGGTAGGGAAGAGTTGGAAAGTTATGGTGGATGTGTGAAGATTATTGTTCATGTGTTGAGGAATGGAAGCTCTAGAGGGATTCAGTATGCATTGTTGGCGCTTACTTCACTTTGTTTTCATAGCAAGGAAATGCTTTTGGTGACTCTGCAAGAAGGGGTTTTGGATATCTGTCTTGGATTGGTTGATGATGATAATGAGAAAGTTGGGAGAAATTCATCCAATTTGATTCGGATTCTTCGCAGCTGTGGCAATCATTGGATGTATTGA 1113 0.4492 MESHLPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDDGHRTCPITKLPLPDNPTLIPNHALRSLISTYTLLPPLHQIISQPETLISILTKSSSSSDSKIDSLRQLARLSKRDANFRRRLVDSGAVSAVLFCLDSSSGETKLQEKALSLLLNLSLDDDSKIGLVAEGAIDRVVAFLLREASSDCCALAATIITSLAVVEVNKATIGAFPGAIEALVAILRDGKGRERKEAATALYALCCFRDNRKRAVDCGAVPILMRSVECGLERGVEVIGLLVKCKEGREELESYGGCVKIIVHVLRNGSSRGIQYALLALTSLCFHSKEMLLVTLQEGVLDICLGLVDDDNEKVGRNSSNLIRILRSCGNHWMY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03763 370 SUPERFAMILY RING/U-box 4 73 - -
Trre7g03763 370 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Trre7g03763 370 Gene3D - 212 366 IPR011989 -
Trre7g03763 370 PANTHER U BOX DOMAIN-CONTAINING 5 342 - -
Trre7g03763 370 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Trre7g03763 370 SUPERFAMILY ARM repeat 74 361 IPR016024 -
Trre7g03763 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Trre7g03763 370 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Trre7g03763 370 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Trre7g03763 370 CDD RING-Ubox_PUB 6 55 IPR045210 -
Trre7g03763 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 127 171 IPR000225 GO:0005515
Trre7g03763 370 Gene3D - 83 211 IPR011989 -
Trre7g03763 370 SMART arm_5 280 321 IPR000225 GO:0005515
Trre7g03763 370 SMART arm_5 116 158 IPR000225 GO:0005515
Trre7g03763 370 SMART arm_5 159 200 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03763 Trre-Chr7 45748390 45749502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03763 1 361 U-box Gene Family AT4G21350 58.378 7.97e-137 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03763 - - gmx:100785141 503.056