Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03738 ATGGCGAGAAAGTCATCATCGGCAAATGAAGAGATTCTACCGGACGAACTCCGGTGCGGACGAACCGACGGCAAACAATGGCGGTGCAAGCGGAGAGTGATGGATAATCTGAAACTCTGCGAGATTCACTATCTTCAAGGTAAGCATCGTCAATACAGAGAGAAAGTTCCCGAGTCTCTGAAGCTTCAGAGAAAGCGTAAAAACGACGATGAAGTTACAGAAACTGTTGTAATCGATAATGCGGAAGCTAGGGTACCGAGGGAGCTGAAAATGGAGCTGAGAAAGAACAAGAAGAAGAAGGTGAAGCTCGCAGAGAGTTCGGAATCGGTTACGGTAACCGATTCTGCTTCAGGTTCTGGTTCTGTTAGGAAGAAGACAATGAAGCAATGTGATTCACAATTAGATCTTATAAGAATGGTTTTGGAAAGAGAAGTTGAGAAGAGAAAAAAGAACAACAATGAGAATAAGAAGAATAAGAAAAAGAAGAAGAAAATGAAGAAAAAAGAGATTAAATTAGAAGAAGATGAATTCAATGAAGGAGAATTAAGGAGAGAGTTACCAAATGGTGTTATGGAAATATCTCCAGCTTCAACACCTCATGATTATAACAATGTGAGTTCTCATTGTGATGTGAAAGTTGGTGTTGATCATAATAAGGTTGTAGCTGTAACGCCGCATTACTTCAGGTCGAAGAATGTTGATAGGGTTGCTGTAGGAAAGTTGCAAGTTGTGCCTTATGGACCAAGCTTGAAGAAGGGAAATACTAAAAGGAAGTGTCACTCGTGCCAGAGAAGTGAATCGTTGAATCTCGTCCAGTGTTCTAGCTGTAACAAGGAGTTTTTCTGCTTTGATTGCATTAGAGATCGGTATCTTGAATCAAAAAAAGAAGTTAAGAAGGCGTGCCCAGTTTGTCAAGGAACTTGCACTTGTAAGGTTTGCTTGGCAGGCCAATCTAACGACAGTGAAAGTAAGGTCGAAAGTAAGTCCTATTTATCGGGTAAAAGTAGAGTTGATAGAATACTCCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCGAATAAGTGAAAACCTAGAAACTGAGCTAGAAACAGAAGCAAAACTCAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGTTATAATGAAAATATTTATTGCAATCACTGCAAAACACCCATCCTGGATCTCCATAGAAGCTGTGCTAGTTGTTCGTATAGCCTATGCTTAAGTTGTTGTGAGAAATCATCTCAAGGAAGAACTTCTAGAGAAATTAACTCATCAATGTTGAAGCTACCTGATCAAATGAAAGCTTGTGTTGACAGTGAGGGCCATGTTTTGGATCAGAAGGACATTTCTTGTGACAATTTAACTCCTACTTTAACATTGCCTGAGGAGACAAATTGCAATGATATTGAAAAAGTATTGTGCCCTCCTACGGAGCTTGGTGGTTGTGGTACAGGCCTGCTAGATTTAAGATGCATTTTTCCCATGAATTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGAATTTCCCGACACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTTTTGACACCGACCTCAATAGTAACCAATATAACCAGTTGCAGAAAGCAGCTGAGAGAGAAGATTCATCAGATAATTGTTTGTTCTGTCCCACAGTTTTGGACATCAATGGTAATAATTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTACATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAAGTATGAGAATAATAAAGAGTTACTTGAATCCTGTTTGGATTGGTGTGAGGTGGAAATAAACATTAGGCAATATTTTACTGGGTCTCTCAAATGTCGTCCTCAGAGAAGCACTTGGCATGAGATGCTGAAACTGAAGGGATGGCTGTCTTCCCTAGTATTTAAAGAGGAGTTTCCAGCCCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCTGCGTCTGGTCCTCTGAATTTAGCTGCAAATTTGCCGCACGGGAGTGTGAAACATGACATTGGGCCGTATGTCTATATTTCATATGGCAGTGCAGACATAGAAGCTGATTCTGTGACAAAACTCTGCTGCGATTCATATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCTTACAAAACTAAGAAAATTGCTGAAAAAGCACAAAGCTCTGTGTCAAGTGGAGTCTGTTGCTACTGAGCAGTTACCTGAACAGGAAGTGAAAGGAATGGCATTATCACATGCTGCAGAAATGGAACAAAAAAGTTTGAGGAGTATGGGGAAAGAAGCTATGGAGTTTTTAAGGAGAGTCGATAGAACATCTTGCATCTCCTCAACTGGAGCTAAAAAAGCTTCTACCCAGAGTATAGACAACAATATTTCCCAGGATGGAGAGCGTGGCGTCTTTTCTGATTCTGAACCCTCTCTTGATGGAACTGTTCATACCACCAATTTGTCAGAACACAATAATCCTAGAAGTCCCTCTGAAAGCTCCAACAGTTATAAGAAAAAGTTTCCTGAGCATTCAGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTGCCAAAGCTCATAGAATATATTAAAAGACATTGTGATGAACTTACTTCTACCCATGACTCTCACAAGAAGATGGTTCATCCGATTCTAGATCAGAGCATTTTTCTTGACAATACTCACAAAAAGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTTATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACTGAGTGTATCCAGTTGATTGATGAGCTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTACATAGTATGAGTACAGCGATTAAAGAAATACGCCAGCTTACATGCAAAACATAA 3132 0.4017 MARKSSSANEEILPDELRCGRTDGKQWRCKRRVMDNLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNDDEVTETVVIDNAEARVPRELKMELRKNKKKKVKLAESSESVTVTDSASGSGSVRKKTMKQCDSQLDLIRMVLEREVEKRKKNNNENKKNKKKKKKMKKKEIKLEEDEFNEGELRRELPNGVMEISPASTPHDYNNVSSHCDVKVGVDHNKVVAVTPHYFRSKNVDRVAVGKLQVVPYGPSLKKGNTKRKCHSCQRSESLNLVQCSSCNKEFFCFDCIRDRYLESKKEVKKACPVCQGTCTCKVCLAGQSNDSESKVESKSYLSGKSRVDRILHFHYLICMLLPVLKRISENLETELETEAKLKGKNISDIQIKQVEFGYNENIYCNHCKTPILDLHRSCASCSYSLCLSCCEKSSQGRTSREINSSMLKLPDQMKACVDSEGHVLDQKDISCDNLTPTLTLPEETNCNDIEKVLCPPTELGGCGTGLLDLRCIFPMNLLKEMEVKAEEIVCSYEFPDTLDKSSSCSLCFDTDLNSNQYNQLQKAAEREDSSDNCLFCPTVLDINGNNFEHFQKHWGKGHPIVVQDVLQSTSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKCRPQRSTWHEMLKLKGWLSSLVFKEEFPAHFSEVIDALPVQEYMNPASGPLNLAANLPHGSVKHDIGPYVYISYGSADIEADSVTKLCCDSYDVVNIMTHSADVPLSTEQLTKLRKLLKKHKALCQVESVATEQLPEQEVKGMALSHAAEMEQKSLRSMGKEAMEFLRRVDRTSCISSTGAKKASTQSIDNNISQDGERGVFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDVPKLIEYIKRHCDELTSTHDSHKKMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCKT 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03738 1043 MobiDBLite consensus disorder prediction 827 889 - -
Trre7g03738 1043 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Trre7g03738 1043 MobiDBLite consensus disorder prediction 827 851 - -
Trre7g03738 1043 MobiDBLite consensus disorder prediction 153 167 - -
Trre7g03738 1043 MobiDBLite consensus disorder prediction 106 127 - -
Trre7g03738 1043 SMART cupin_9 677 1006 IPR003347 -
Trre7g03738 1043 MobiDBLite consensus disorder prediction 145 171 - -
Trre7g03738 1043 Pfam JmjC domain, hydroxylase 892 984 IPR003347 -
Trre7g03738 1043 Coils Coil 142 176 - -
Trre7g03738 1043 MobiDBLite consensus disorder prediction 858 883 - -
Trre7g03738 1043 SUPERFAMILY Clavaminate synthase-like 574 1033 - -
Trre7g03738 1043 ProSiteProfiles Zinc finger RING-type profile. 259 305 IPR001841 -
Trre7g03738 1043 MobiDBLite consensus disorder prediction 97 127 - -
Trre7g03738 1043 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 256 338 IPR018866 -
Trre7g03738 1043 Gene3D Cupin 566 1015 - -
Trre7g03738 1043 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 1041 IPR045109 GO:0032454|GO:0033169
Trre7g03738 1043 Pfam WRC 14 55 IPR014977 -
Trre7g03738 1043 ProSiteProfiles JmjC domain profile. 696 1006 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03738 Trre-Chr7 45453557 45458801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03738 8 50 GRF Transcription Factor Family AT4G37740 46.512 3.55e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre7g03738 JmjC 6.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03738 K15601 - gmx:100810673 1377.84