Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03737 ATGGCGAGAAAGTCATCATCGGCAAATGAAGAGATTCTACCGGACGAACTCCGGTGCGGACGAACCGACGGCAAACAATGGCGGTGCAAGCGGAGAGTGATGGATAATCTGAAACTCTGCGAGATTCACTATCTTCAAGGTAAGCATCGTCAATACAGAGAGAAAGTTCCCGAGTCTCTGAAGCTTCAGAGAAAGCGTAAAAACGACGATGAAGTTACAGAAACTGTTGTAATCGATAATGCGGAAGCTAGGGTACCGAGGGAGCTGAAAATGGAGCTGAGAAAGAACAAGAAGAAGAAGGTGAAGCTCGCAGAGAGTTCGGAATCGGTTACGGTAACCGATTCTGCTTCAGGTTCTGGTTCTGTTAGGAAGAAGACAATGAAGCAATGTGATTCACAATTAGATCTTATAAGAATGGTTTTGGAAAGAGAAGTTGAGAAGAGAAAAAAGAACAACAATGAGAATAAGAAGAATAAGAAAAAGAAGAAGAAAATGAAGAAAAAAGAGATTAAATTAGAAGAAGATGAATTCAATGAAGGAGAATTAAGGAGAGAGTTACCAAATGGTGTTATGGAAATATCTCCAGCTTCAACACCTCATGATTATAACAATGTGAGTTCTCATTGTGATGTGAAAGTTGGTGTTGATCATAATAAGGTTGTAGCTGTAACGCCGCATTACTTCAGGTCGAAGAATGTTGATAGGGTTGCTGTAGGAAAGTTGCAAGTTGTGCCTTATGGACCAAGCTTGAAGAAGGGAAATACTAAAAGGAAGTGTCACTCGTGCCAGAGAAGTGAATCGTTGAATCTCGTCCAGTGTTCTAGCTGTAACAAGGAGTTTTTCTGCTTTGATTGCATTAGAGATCGGTATCTTGAATCAAAAAAAGAAGTTAAGAAGGCGTGCCCAGTTTGTCAAGGAACTTGCACTTGTAAGGTTTGCTTGGCAGGCCAATCTAACGACAGTGAAAGTAAGTCCTATTTATCGGGTAAAAGTAGAGTTGATAGAATACTCCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCGAATAAGTGAAAACCTAGAAACTGAGCTAGAAACAGAAGCAAAACTCAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGTTATAATGAAAATATTTATTGCAATCACTGCAAAACACCCATCCTGGATCTCCATAGAAGCTGTGCTAGTTGTTCGTATAGCCTATGCTTAAGTTGTTGTGAGAAATCATCTCAAGGAAGAACTTCTAGAGAAATTAACTCATCAATGTTGAAGCTACCTGATCAAATGAAAGCTTGTGTTGACAGTGAGGGCCATGTTTTGGATCAGAAGGACATTTCTTGTGACAATTTAACTCCTACTTTAACATTGCCTGAGGAGACAAATTGCAATGATATTGAAAAAGTATTGTGCCCTCCTACGGAGCTTGGTGGTTGTGGTACAGGCCTGCTAGATTTAAGATGCATTTTTCCCATGAATTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGAATTTCCCGACACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTTTTGACACCGACCTCAATAGTAACCAATATAACCAGTTGCAGAAAGCAGCTGAGAGAGAAGATTCATCAGATAATTGTTTGTTCTGTCCCACAGTTTTGGACATCAATGGTAATAATTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTACATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAAGTATGAGAATAATAAAGAGTTACTTGAATCCTGTTTGGATTGGTGTGAGGTGGAAATAAACATTAGGCAATATTTTACTGGGTCTCTCAAATGTCGTCCTCAGAGAAGCACTTGGCATGAGATGCTGAAACTGAAGGGATGGCTGTCTTCCCTAGTATTTAAAGAGGAGTTTCCAGCCCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCTGCGTCTGGTCCTCTGAATTTAGCTGCAAATTTGCCGCACGGGAGTGTGAAACATGACATTGGGCCGTATGTCTATATTTCATATGGCAGTGCAGACATAGAAGCTGATTCTGTGACAAAACTCTGCTGCGATTCATATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCTTACAAAACTAAGAAAATTGCTGAAAAAGCACAAAGCTCTGTGTCAAGTGGAGTCTGTTGCTACTGAGCAGTTACCTGAACAGGAAGTGAAAGGAATGGCATTATCACATGCTGCAGAAATGGAACAAAAAAGTTTGAGGAGTATGGGGAAAGAAGCTATGGAGTTTTTAAGGAGAGTCGATAGAACATCTTGCATCTCCTCAACTGGAGCTAAAAAAGCTTCTACCCAGAGTATAGACAACAATATTTCCCAGGATGGAGAGCGTGGCGTCTTTTCTGATTCTGAACCCTCTCTTGATGGAACTGTTCATACCACCAATTTGTCAGAACACAATAATCCTAGAAGTCCCTCTGAAAGCTCCAACAGTTATAAGAAAAAGTTTCCTGAGCATTCAGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTGCCAAAGCTCATAGAATATATTAAAAGACATTGTGATGAACTTACTTCTACCCATGACTCTCACAAGAAGATGGTTCATCCGATTCTAGATCAGAGCATTTTTCTTGACAATACTCACAAAAAGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTTATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACTGAGTGTATCCAGTTGATTGATGAGCTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTACATAGTATGAGTACAGCGATTAAAGAAATACGCCAGCTTACATGCAAAACATAA 3120 0.4016 MARKSSSANEEILPDELRCGRTDGKQWRCKRRVMDNLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNDDEVTETVVIDNAEARVPRELKMELRKNKKKKVKLAESSESVTVTDSASGSGSVRKKTMKQCDSQLDLIRMVLEREVEKRKKNNNENKKNKKKKKKMKKKEIKLEEDEFNEGELRRELPNGVMEISPASTPHDYNNVSSHCDVKVGVDHNKVVAVTPHYFRSKNVDRVAVGKLQVVPYGPSLKKGNTKRKCHSCQRSESLNLVQCSSCNKEFFCFDCIRDRYLESKKEVKKACPVCQGTCTCKVCLAGQSNDSESKSYLSGKSRVDRILHFHYLICMLLPVLKRISENLETELETEAKLKGKNISDIQIKQVEFGYNENIYCNHCKTPILDLHRSCASCSYSLCLSCCEKSSQGRTSREINSSMLKLPDQMKACVDSEGHVLDQKDISCDNLTPTLTLPEETNCNDIEKVLCPPTELGGCGTGLLDLRCIFPMNLLKEMEVKAEEIVCSYEFPDTLDKSSSCSLCFDTDLNSNQYNQLQKAAEREDSSDNCLFCPTVLDINGNNFEHFQKHWGKGHPIVVQDVLQSTSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKCRPQRSTWHEMLKLKGWLSSLVFKEEFPAHFSEVIDALPVQEYMNPASGPLNLAANLPHGSVKHDIGPYVYISYGSADIEADSVTKLCCDSYDVVNIMTHSADVPLSTEQLTKLRKLLKKHKALCQVESVATEQLPEQEVKGMALSHAAEMEQKSLRSMGKEAMEFLRRVDRTSCISSTGAKKASTQSIDNNISQDGERGVFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDVPKLIEYIKRHCDELTSTHDSHKKMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCKT 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03737 1039 Gene3D Cupin 562 1011 - -
Trre7g03737 1039 ProSiteProfiles JmjC domain profile. 692 1002 IPR003347 -
Trre7g03737 1039 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 823 885 - -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 153 167 - -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 106 127 - -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 823 847 - -
Trre7g03737 1039 Pfam JmjC domain, hydroxylase 888 980 IPR003347 -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 145 171 - -
Trre7g03737 1039 SUPERFAMILY Clavaminate synthase-like 570 1029 - -
Trre7g03737 1039 Coils Coil 142 176 - -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 854 879 - -
Trre7g03737 1039 ProSiteProfiles Zinc finger RING-type profile. 259 305 IPR001841 -
Trre7g03737 1039 MobiDBLite consensus disorder prediction 97 127 - -
Trre7g03737 1039 SMART cupin_9 673 1002 IPR003347 -
Trre7g03737 1039 Pfam WRC 14 55 IPR014977 -
Trre7g03737 1039 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 1037 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03737 Trre-Chr7 45453557 45458801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03737 8 50 GRF Transcription Factor Family AT4G37740 46.512 3.51e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre7g03737 JmjC 6.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03737 K15601 - gmx:100810673 1383.62