Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03726 ATGGGAAGAGCACCTTGTTGTGAAAAGAATGGTCTTAAGAGAGGACCATGGACACAAGAAGAAGACCAAAAACTCACTAATTACATTCATAAACATGGTTATGGTAACTGGAGATTACTCCCAAAGAATGCTGGATTACAAAGGTGTGGAAAGAGTTGTCGTCTCCGTTGGACAAACTATCTTCGACCAGATATAAAGCGAGGTCGATTCTCTTTTGAAGAAGAAGAAACCATAATTCAGCTACATAGCATTCTCGGAAACAAATGGTCTGCAATTGCTGCTAGGCTACCCGGAAGAACAGACAACGAAATCAAGAATTATTGGAACACTCACATTAGGAAAAGATTATTAAGGATGGGAATTGATCCTGTGACACATAATCCAAGACTTGATCTTTTGGATCTTTCTTCTATCCTAAATTCATCTCTATCACAAATGAACATTCAAAGGCTAATTGATACACAACAATTAGTGAACCCTCATGAGATTCTAAAGTTTGCTTCATCACTCTTTTCCTCTCAAAATGGACAAGAGAATCACCAAATTGATCAAAATAAACAAATTATCTCACACTTGGATCAAGAAGCTTGCAACATGTTGTTGAATAATTCAATGACTTTACCTCAGACACACTTGGTTGAATCAAATGAGAATCTATACTCATCTTTTTTGCCTGAATTTGGCTTCCAACAACAACATGAACATGTTCAATTAAGTGATTATTTGCATTGCAATGGAATTGCTCCAACAGAGGATTATGCCTATCAATTACCAAGCTATGATTACTTAAGTTCTGATTATCATGGAAATGGTCTAATTATGGATCCTATGATATCAGAAACCTCAAACTTTCATTCCAATAACAACAATCAAAACTTCAATTTCGCTTCTTCGGTTCTATCTACGCCTTCATCGAGTACCACACCGTTGAATTCTAATTTGACGAATATCAATGGAAGCATTAGTACTGAAGATGAGACAGAGAGCTATGTTAGCAGCAATATGTTTCAATTTCAAATCTCAGATATCTTAGGTGTGAATGAGTTCATGCAGTAA 1056 0.3608 MGRAPCCEKNGLKRGPWTQEEDQKLTNYIHKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDLSSILNSSLSQMNIQRLIDTQQLVNPHEILKFASSLFSSQNGQENHQIDQNKQIISHLDQEACNMLLNNSMTLPQTHLVESNENLYSSFLPEFGFQQQHEHVQLSDYLHCNGIAPTEDYAYQLPSYDYLSSDYHGNGLIMDPMISETSNFHSNNNNQNFNFASSVLSTPSSSTTPLNSNLTNINGSISTEDETESYVSSNMFQFQISDILGVNEFMQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03726 351 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre7g03726 351 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre7g03726 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre7g03726 351 CDD SANT 69 112 IPR001005 -
Trre7g03726 351 SMART sant 66 114 IPR001005 -
Trre7g03726 351 SMART sant 13 63 IPR001005 -
Trre7g03726 351 FunFam Transcription factor MYB39 69 130 - -
Trre7g03726 351 CDD SANT 16 61 IPR001005 -
Trre7g03726 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 275 - -
Trre7g03726 351 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre7g03726 351 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre7g03726 351 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre7g03726 351 Gene3D - 69 116 - -
Trre7g03726 351 FunFam MYB-related transcription factor 13 66 - -
Trre7g03726 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre7g03726 351 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03726 Trre-Chr7 45360360 45361694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03726 1 350 MYB Transcription Factor Family AT4G21440 55.319 3.42e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g03726 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03726 K09422 - gmx:100810143 379.407