Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03709 ATGCGCAATTTCAATTTCTTCCAACGTTTCTCTAGAACTTTCCGTGATTATGACTCTCAGTTCAAGCTTGTTCTTCTCTGCACCACCGTGAGTGGTGGTGGTCTTTTGGCTTACGGTGAGGCTGTTGCTACATCTGAAGCGGCGGTACCTGAGAAGAAAAAGGTGTTGGTGCTGGGAACTGGTTGGGCAGGAACAAGTTTCTTGAGGAATCTCAATGATCCTCGATATGAGGTTCACGTTGTGTCTCCTAGGAATTATTTTGCGTTCACTCCTCTGCTGCCTAGTGTTACATGTGGCACTGTCGAGGCTCGCAGCATTGTTGAACCCGTTCGCAATATCTTCAGGAAGAAACATGTGGACTCTCGATTCAGTGAAGCAGAATGTATCAAGATTGATGCAGTAAACAGAAAAGTTTACTGTCGATCTAATATAAACAACAATTCGAATGAAAAACAAGACTTCGTCGTGGATTATGACTACTTAATCATAGCTGTGGGAGCAAATGTCAACACATTTAATACTCCTGGAGTCACGGAGCATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAAAAGATTAGAAGAACTGTAATTGACTGCTTTGAGAGAGCAAGTTTGCCAAGTGTAAGTGATGAAGAGAAAAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCTGCTGCACTTCATGATTTTGTTAGTGAGGATTTGGTGAATTTATATCCTGGAGTAAAAGATTTAGTTAAAATTACGCTTCTGGAAGCTGGAGGTCATATCTTGAGCATGTTTGACAAAAGAATAACAGCTTTTGCTGAAGACAAGTTCCGAAGAGACGGTATTGATGTTAAAACCGGATCCATGGTTGTGAAGGTATCTGACAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGAAATTACTTCAATTCCATATGGAATGGCTGTCTGGTCAACCGGTATTGGCACTCGTCCATTCATAAAAGATTTTATGACACAAATTGGTCAGATTAACAGACGTGCCATAGCTACTGATGAATGGTTGAGAGTCGAGGGAACCAACAATGTGTATGCGCTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGACTGATACAGACAACTCGGGAACACTTACGCTCAAAGAATTTCAGGAGGTGATGGATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTAAAGAATAAACAGATGCATGGCATTGCTGATCTTTTGAAGGAATCCAAGGGAGATGTCAAAAAAGAATCTATTGAACTGAATATCGAAGAACTCAAAACTGCACTTACCAATGTGGACTCAGAGATGAAATTTCTTCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGTGCCTACCTAGCCAAGTGTTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCTATTAGGTTCAGGGAAGAAGGCCGTCATCGCTTCAAACCCTTCAGGTACAAGCATTTAGGTCAATTTGCTCCTCTGGGAGGAGAGCAGACAGCTGCACAGCTACCTGGAGATTGGGTTTCGATTGGACACAGCAGTCAGTGGCTGTGGTATTCTGTCTATGCAAGTAAGCAAGTTAGCTGGCGCACAAGGGCATTAGTGGTGTCAGACTGGATGAGACGATTTATTTTTGGGAGGGACTCGAGTCAAATCTGA 1737 0.4226 MRNFNFFQRFSRTFRDYDSQFKLVLLCTTVSGGGLLAYGEAVATSEAAVPEKKKVLVLGTGWAGTSFLRNLNDPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKHVDSRFSEAECIKIDAVNRKVYCRSNINNNSNEKQDFVVDYDYLIIAVGANVNTFNTPGVTEHCHFLKEVEDAQKIRRTVIDCFERASLPSVSDEEKKRILHFAIVGGGPTGVEFAAALHDFVSEDLVNLYPGVKDLVKITLLEAGGHILSMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITSIPYGMAVWSTGIGTRPFIKDFMTQIGQINRRAIATDEWLRVEGTNNVYALGDCATINQRKVMEDIAAIFKKTDTDNSGTLTLKEFQEVMDDICERYPQVELYLKNKQMHGIADLLKESKGDVKKESIELNIEELKTALTNVDSEMKFLPATAQVASQQGAYLAKCFNRMEECEKNPEGPIRFREEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWMRRFIFGRDSSQI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03709 578 Gene3D - 420 577 - -
Trre7g03709 578 Gene3D - 43 413 - -
Trre7g03709 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 577 - -
Trre7g03709 578 SUPERFAMILY FAD/NAD(P)-binding domain 214 373 IPR036188 -
Trre7g03709 578 PANTHER NADH DEHYDROGENASE 47 578 IPR045024 GO:0003954|GO:0006116
Trre7g03709 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 405 - -
Trre7g03709 578 SMART efh_1 380 408 IPR002048 GO:0005509
Trre7g03709 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Trre7g03709 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Trre7g03709 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Trre7g03709 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Trre7g03709 578 SUPERFAMILY EF-hand 369 465 IPR011992 -
Trre7g03709 578 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Trre7g03709 578 Coils Coil 440 460 - -
Trre7g03709 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Trre7g03709 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03709 Trre-Chr7 45059600 45063654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03709 1 578 EF-hand Containing Proteins AT4G05020 70.626 0.0 877
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03709 7 45059600 45063654 Trre3g00376 3 2458141 2463159 PCT