Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03682 ATGAACGACTTATTTTCAAATTCCTTCAAAAAATACACTGATTTGAAGGAACAAACCTACAATGATGATGTCGAGGCAGGGAACAAAGAAAGTGTCAATCTCGATAAATTCTTTGAAGATGTCGAGAATATAAAACAAGACATGAAAACAATTGAAACATTGTTTAAGAAATTGCAAGAGGCTAATGAAGAAAGTAAAACCGTGCACAATGCTAAAACAATGAAAGAGCTTCGATCGCGAATGGACAAAGATGTTGAACAAGTCCTTAAACGTGTCAAAATAATTAAAGGAAAACTCGAAGCATTGGATCGTTCCAATGCGGCTAATAGAAACATTCCCGGATGTGGTCCAGGGTCATCAGCAGATAGAACTAGAACTTCGGTTGTTAGTGGTTTAGGGAAGAAACTCAAAGATATGATGGATAGTTTTCAAGGGTTGAGAGCAAAAATGCACCACGAGTATAAGGAAACAGTGGAACGTAGATATTTTACAATAACGGGGGAGAAGGCGGACGAAGAAACTATAGACAATTTGATATCAAGTGGAGAAAGTGAAAATTTCATGCAAAGGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATTCTGTTAAGGAAATAGAGAAAAATTTGATTGAGTTGCATCAAGTGTTTTTGGACATGGCAGCTTTGGTAGAGTCTCAAGGGCAACATCTTAATAACATAGAGAGCCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGAACAACTTGTGGAAGCTAGAGAGCAACAAAAGAATTCTAGGAAGTGGACATGTTATGCCATACTTCTAGGTATTGTTCTTATTATTGTGCTCTTGTTTCCTCTCTTGATGTCACTTTTACCTCATTTGTTAAGAAGATGA 921 0.3692 MNDLFSNSFKKYTDLKEQTYNDDVEAGNKESVNLDKFFEDVENIKQDMKTIETLFKKLQEANEESKTVHNAKTMKELRSRMDKDVEQVLKRVKIIKGKLEALDRSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDSFQGLRAKMHHEYKETVERRYFTITGEKADEETIDNLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDSVKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFVRRGTEQLVEAREQQKNSRKWTCYAILLGIVLIIVLLFPLLMSLLPHLLRR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03682 306 SMART tSNARE_6 199 266 IPR000727 -
Trre7g03682 306 CDD SNARE_syntaxin1-like 203 265 - -
Trre7g03682 306 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Trre7g03682 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Trre7g03682 306 SMART SynN_4 29 155 IPR006011 GO:0016020
Trre7g03682 306 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Trre7g03682 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Trre7g03682 306 PANTHER SYNTAXIN 42 290 IPR045242 -
Trre7g03682 306 Pfam SNARE domain 242 292 IPR000727 -
Trre7g03682 306 FunFam Syntaxin 132 197 297 - -
Trre7g03682 306 Coils Coil 41 64 - -
Trre7g03682 306 Gene3D - 193 296 - -
Trre7g03682 306 CDD SynN 34 191 IPR006011 GO:0016020
Trre7g03682 306 Gene3D - 34 161 - -
Trre7g03682 306 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03682 Trre-Chr7 44677464 44678384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03682 1 304 SNARE and Associated Proteins AT1G61290 77.303 2.48e-177 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03682 K08486 - gmx:100818999 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03682 7 44677464 44678384 Trre7g03682 7 44677464 44678384 ECH
Trre7g03682 7 44677464 44678384 Trre3g00386 3 2520622 2521536 PCT