Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03656 ATGGGAGCGGAAGTGATTGTGAATTGGGGTACGTGGGAGGAGCTTCTCCTTGGTGGTGCTGTTCTCCGACACGGCACTCGTGATTGGTCCGTCGTCGCTGCTGAACTCCGAGCTCGAACCCTTTCTCCATACGCTATCACACCCGAGGTCTGTAAAGCCAAATATGAAGACATACAACAGCGCTATTCAGGGTGCACGGCTTGGTTTGAGGAGCTTAAGAAGAAAAGAGTAGAAGAGCTTAAGAGAGCTTTGGAGAAATCCGAAAATTCAATTGGGTCTCTTCAATCAAGGCTTGAATCCCTTAAAGCTGACAAGAACGAGAAAAGAGATGATCGTCATGTTGAAAACGACTCAGTTGGACCAGAAGAATTACATGTTCCTTCACAGAAATTGGACAGAGTCGAATCTTCCACTAAAGAGATGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAAACCGAGACAAACTGGTCTCATGAATGCCAAGTTCCAGCAATGTCTTCCGAAGACATGGAGATTACGCCAGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTCTGAATGTAGATAAGTTGACAGATACTGTATATGAAGGACAGGGAGGGTATTGTAAAAAAAGGAGAGGGAAGAGAAAGAGGAAGGATTGTGGCAAAAGTATTAATGAAGCGAGTGTAAGAGAAAGTGACTTTTCAATTGATGTGTCTCGGTTGAAAGAAAGTTCTACCAGTAACTGTGGCGAGGTTGTTAAATCTTCTGGTATAACTGAGGAGAATACAAACTTGAAAAAGGATGAAATGAAAGAGATGATGGAGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTTGGTCGCAAGCATGATAGCCAGAAGCGAGCAAGGTACAGGCAGTTAATCCGAAGGCACATGGACTTTGACATTATAAAGTCAAGCATTAGCAACAAAAAAATTAATTCAAAGATGGAACTTTTCAGAGACATGCTTCTACTGACCAACAATGCTTTGATTTTCTACTCCAAGAACACTCGTCAATATAAATCTGCGTTACTCATGAGAGACATTGTCACAAAAAAACTGAGGGAGAATGGCATGTCTTGCACTAAGAGTGACATACATGCTAATGTCGACACTGACTCCATGGTATTACCTGTTCGCGAACCTTCTGTGAAAGTAAGAAGTGTTCGCCCCAGTAGCCGAAAGATTGATGTTGCCGAGACAGCTGATGTAAGCAATCCTGTTTCTGGTCTCTCGCATGTAGCCAAGAAGCCTAGTAGTAGTAAAGAGGATTCTCCATCTTCAGCGAAAGCCTTACACATCAAGAAAGCTTTTGGTGGACCTAAAAAACTTGAACCTGCAACTCCAACTCCAACTAAGGAAACAAAGGAAAAGAAAAGGAGAATTAAGCAATGA 1422 0.4226 MGAEVIVNWGTWEELLLGGAVLRHGTRDWSVVAAELRARTLSPYAITPEVCKAKYEDIQQRYSGCTAWFEELKKKRVEELKRALEKSENSIGSLQSRLESLKADKNEKRDDRHVENDSVGPEELHVPSQKLDRVESSTKEMSKDGLSAGSFTHQTETNWSHECQVPAMSSEDMEITPGVSGSIEHEKVLNVDKLTDTVYEGQGGYCKKRRGKRKRKDCGKSINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGITEENTNLKKDEMKEMMEILDSVLEIKGASCFGRKHDSQKRARYRQLIRRHMDFDIIKSSISNKKINSKMELFRDMLLLTNNALIFYSKNTRQYKSALLMRDIVTKKLRENGMSCTKSDIHANVDTDSMVLPVREPSVKVRSVRPSSRKIDVAETADVSNPVSGLSHVAKKPSSSKEDSPSSAKALHIKKAFGGPKKLEPATPTPTKETKEKKRRIKQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03656 473 MobiDBLite consensus disorder prediction 100 140 - -
Trre7g03656 473 ProSiteProfiles Bromodomain profile. 287 349 IPR001487 GO:0005515
Trre7g03656 473 MobiDBLite consensus disorder prediction 95 151 - -
Trre7g03656 473 SUPERFAMILY Bromodomain 259 365 IPR036427 GO:0005515
Trre7g03656 473 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 8 269 - -
Trre7g03656 473 Coils Coil 70 111 - -
Trre7g03656 473 Coils Coil 462 473 - -
Trre7g03656 473 SMART bromo_6 264 368 IPR001487 GO:0005515
Trre7g03656 473 Gene3D - 258 379 IPR036427 GO:0005515
Trre7g03656 473 Pfam Bromodomain 272 352 IPR001487 GO:0005515
Trre7g03656 473 CDD Bromodomain 267 363 - -
Trre7g03656 473 MobiDBLite consensus disorder prediction 416 436 - -
Trre7g03656 473 MobiDBLite consensus disorder prediction 416 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03656 Trre-Chr7 44258516 44261821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre7g03656 Bromodomain 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03656 - - gmx:100804245 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03656 7 44258516 44261821 Trre3g00400 3 2629808 2635207 PCT