Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03643 ATGGACAGCACAGATTCTTCATCATGTTCTCAACATCCACACCTTCCACCAGGCTTTAGATTCCACCCAACTGATGAAGAACTTGTCGTTCACTACCTCAAGAGAAAAGCTTCATCAGCACCTCTTCCAGTAGCCATCATAGCAGATATTGATCTCTACAAATTCGACCCATGGGAACTCCCAAGTAAAGCAACTTTTGGGGAACAAGAATGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCCCGGCCCAATAGGGCTGCAACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGGGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGGGTTAAAACTAATTGGATTATGCATGAGTATAGGCTTATCACTGATCAAAATAATATTAGTAATAATCATTCCTATAATGCAAGTTCAAAAACTCCTCCTATGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCTTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTAGCACCATGCCAAGGCCACCACTAATGGATCAATATGATAAGGATCTTTCAATGGAACATACATATAATATGCAACAAAGCTCTAAACCTCAATGTTCAAGAAGCACATGTTATGGACTTGAAAATGATGACAATTTCTTTGAAGGAATCTTAGCAGCTGATCAAGGAATGCAAAATGGTTGTGACATAAACTCAAAGGGTGATGAATCATTCCCTATGAAACGTGCGCTAAATGCATCATCACAATTTTGGAATGAAACAGGTTCACCAGGGTCATCTTCTTCAAGCAAGAGATTTCATGGAGATCTTAATAATGGAAATAGCAATGTTGAGGAAAATAATTCATTTGTTTCTTTGCTTAGCCAGCTTCCACCAAACACAACTTTTCATCAAAATTCAATTCTTGGGGATGGTGTAATGAGGCAACAATTTCAACTTCCAGACATAAATTGGAACTAA 1041 0.3881 MDSTDSSSCSQHPHLPPGFRFHPTDEELVVHYLKRKASSAPLPVAIIADIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDQNNISNNHSYNASSKTPPMPSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPPLMDQYDKDLSMEHTYNMQQSSKPQCSRSTCYGLENDDNFFEGILAADQGMQNGCDINSKGDESFPMKRALNASSQFWNETGSPGSSSSSKRFHGDLNNGNSNVEENNSFVSLLSQLPPNTTFHQNSILGDGVMRQQFQLPDINWN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03643 346 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g03643 346 ProSiteProfiles NAC domain profile. 15 191 IPR003441 GO:0003677|GO:0006355
Trre7g03643 346 MobiDBLite consensus disorder prediction 277 304 - -
Trre7g03643 346 Gene3D NAC domain 24 196 IPR036093 GO:0003677|GO:0006355
Trre7g03643 346 PANTHER NAC TRANSCRIPTION FACTOR 56 15 219 - -
Trre7g03643 346 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Trre7g03643 346 MobiDBLite consensus disorder prediction 151 177 - -
Trre7g03643 346 FunFam NAC transcription factor 56 24 196 - -
Trre7g03643 346 SUPERFAMILY NAC domain 10 191 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03643 Trre-Chr7 43787303 43788919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03643 5 346 NAC Transcription Factor Family AT1G61110 54.237 1.08e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre7g03643 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03643 - - gmx:100797132 486.493