Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03634 ATGGGTTTGAGTTCAAAACAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAATCACAAGATTTAGAACTTCCAAAGCCTCATCATCTAATGAGAAAACAACAACAGCAGCAGCAACAACAAACTCAACAGCAATCAGAACATTTGAATTGTCCAAGATGTGATTCAACAAACACAAAATTTTGTTACTATAACAATTATAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGCGGAACGTTACGCAATGTTCCGGTTGGTGGTGGAAGAAAGAATAAGAGAAGCAAAAAATCAACCACACCAATTACTTCTAATTCAACCATCACAGCTACTACTACTGCTACTTGCACCACCTCAATTGTTGCTAATATGAATGGAGGTTTAAATAGCAACATGTCAATTCAAAACCCTCTTGGAGTTTGTGATCAAAAAACCATTCCTTCATCTCTATATCAAGCTCTAATTCATCCACCATCTTTGCTTCTACATCAAAATATGATGAATACAAGAGACTTATTAGAAAGCAAAGATTTTGAGTTTAAAACAATGGAGGAACCAATAATTCCAAGCACTGGTTGCACTAATACAAAGCCATGGGAGATACCTGCCGCCGCCGCCGCAGCAGCAGCAACAACTGGTGGAATGGAAGCTTCAAAGTATTGGAATTGGGAAGACATTGATTCATTGAGAAGAAAAAGTAACATCTCAACATGTGATATGGAATCTGCTTTAGCACTGAACAGACAGGAGAATGTGATGGAAGATTCTTGTGGATATGTTTATTTGTTGGGAATGATATTATCACTGAGATTTTATTGCTTCTGA 861 0.374 MGLSSKQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQQQQTQQQSEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRSKKSTTPITSNSTITATTTATCTTSIVANMNGGLNSNMSIQNPLGVCDQKTIPSSLYQALIHPPSLLLHQNMMNTRDLLESKDFEFKTMEEPIIPSTGCTNTKPWEIPAAAAAAAATTGGMEASKYWNWEDIDSLRRKSNISTCDMESALALNRQENVMEDSCGYVYLLGMILSLRFYCF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03634 286 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Trre7g03634 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 171 IPR045174 GO:0003700|GO:0006355
Trre7g03634 286 MobiDBLite consensus disorder prediction 33 54 - -
Trre7g03634 286 MobiDBLite consensus disorder prediction 94 117 - -
Trre7g03634 286 MobiDBLite consensus disorder prediction 35 54 - -
Trre7g03634 286 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Trre7g03634 286 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03634 Trre-Chr7 43637260 43638733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03634 32 121 C2C2-Dof Transcription Factor Family AT1G51700 56.522 5.36e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre7g03634 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03634 - - mtr:25493206 303.138