Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03604 ATGTACGTGGCTTCCATGCGCAAGTCTTTCAAGGATTCCTTAAAACTCCTTGAAGCTGATATCCAGCACGCCAATACTCTGGCGTCAGATTTTCCTAGGGAGTATGATGGTGCATCCGTTCAGATGAGAATGTCATACAGTCCAGCTGCACACTTGTTTCTGTTTTTTGTTCAATGGACAGATTGTCATCTTGCTGGAGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGAACTACCACCATGTCTACCCATGAAAGAAAAGCAAGTATAAGGGAATTCTATGCTGTCATTTATCCCTCTTTATTGCAACTTGAGAAAGGTGTCACTGATTCTGAGGATAGAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGACGAGGACTATAGGCAGTCTTCTGATATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAGATGAATAGTAAAATTGTGTTGCCCAACTGTAATCATGCTATGTGCCTGAAATGCTACCGAGAATGGCGAACAAGATCACAATCATGCCCATTTTGCCGTGACAGTCTGAAGAGAGTTAACTCAGGGGATCTCTGGGTATATACTGATAGAAGGGATGTGGTTGATATGGCAACCGTGACAAGGGAGAATCTCAGACGGCTTTTCATGTACATAGATAAGTTGCCTTTGATTGTTCCAGACTCTCTCTTTGACACTTATGACTCTCACATAAGGTAA 744 0.4194 MYVASMRKSFKDSLKLLEADIQHANTLASDFPREYDGASVQMRMSYSPAAHLFLFFVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDSEDRKQKAVCMERYRRRDDEDYRQSSDIDIEREDECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVYTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03604 247 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
Trre7g03604 247 FunFam RING/U-box superfamily protein 129 198 - -
Trre7g03604 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Trre7g03604 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Trre7g03604 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Trre7g03604 247 SUPERFAMILY RING/U-box 139 194 - -
Trre7g03604 247 SMART ring_2 151 188 IPR001841 -
Trre7g03604 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03604 Trre-Chr7 43277876 43280974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03604 143 192 C3H Transcription Factor Family AT5G41350 40.741 4.14e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03604 K25840 - gmx:100777318 475.322