Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03588 ATGGATATAAACTTTGGTAATTCTTTAGACACATTTTCTTCTGATCAAGATGGTTTGTCCCTTAAGCCATTAAGGTGCCCTGCACCTTTTCTTTTGAAGACTTATGATTTGTTGGAAGAAGGTAGTGAAGAAAAAGATGGCATTAAAATAGTGTCATGGAATGAAGAAGGAAATGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAGCTCATCTTGCCAAAATATTTCAAGCACAATAACTTCTCTAGCTTTATTCGACAATTGAATACATATGGATTTAAGAAAACATCATCTAAAATATGGGAATTCAAGCATGAGAAATTTCAAAAGGGTTGTAGGCATATGCTTGTTGAAATCAATAGGAAAAAGTGTGAGCCAAGTGTGTTTCCTCAATACCTTAAGTCCTGTTCAGAGGAAAATGCTATGACTAGTTCATCAGTGGAAGAAAATAGTAACAATCATGAAATACTCATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGATTTGCAAATGCAAATAGCTGAATGCAAGGCACTTGAAATGAAATTGTTGGATTGTCTCTCTGAATATATGGATACCCGCCAAAATAAAGTTAGGAGACTATGA 615 0.3528 MDINFGNSLDTFSSDQDGLSLKPLRCPAPFLLKTYDLLEEGSEEKDGIKIVSWNEEGNGFVVWSPAEFSELILPKYFKHNNFSSFIRQLNTYGFKKTSSKIWEFKHEKFQKGCRHMLVEINRKKCEPSVFPQYLKSCSEENAMTSSSVEENSNNHEILMEENKNLKKERLDLQMQIAECKALEMKLLDCLSEYMDTRQNKVRRL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03588 204 SUPERFAMILY "Winged helix" DNA-binding domain 27 123 IPR036390 -
Trre7g03588 204 Coils Coil 148 182 - -
Trre7g03588 204 Gene3D - 24 125 IPR036388 -
Trre7g03588 204 FunFam Heat stress transcription factor A-6b 23 124 - -
Trre7g03588 204 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g03588 204 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g03588 204 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 182 IPR027725 -
Trre7g03588 204 SMART hsfneu3 26 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g03588 204 Pfam HSF-type DNA-binding 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03588 Trre-Chr7 42892407 42894764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03588 26 204 HSF AT4G36990 36.946 1.22e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre7g03588 HSF_DNA-bind 6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03588 K09419 - gmx:100783723 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03588 7 42892407 42894764 Trre7g03588 7 42892407 42894764 ECH