Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03587 ATGGAAACACCATTTCTATTATCTTCTGATCTACAACAAGAAAAAGCAAGATCTGATTCAAACAATGGCGGGACGATTCTTTGGATCTTCATCTGCTTCGATCTCCATGGTCGTCACAAATACACCTTCCCAGGAACTCGCCCTAACCAACCTCGCCTTCATCTCCGCCTCCGATCTCCCCAAATTCGCCGTCCCCGGTCACGACAACCTATTCCTAGCTTCCATTGGCGATTCCTACAGAATACAGCTCATGAAAGCATACGTGGTGGTCATATTGCATTGAATTCAATTCAACGTAGATGTGCAAAAGTTTCTTCTGGCGAATCCGTAGACGTGGCTCGATTCGTGCCGCCTGAAAACTTCAACCTGGCAGTGCTAACCCTTGAATTGGACTTTATTAAAAGGGCTGGAAGCAGAAATGAGCAGATTGATGCTATTGTACTTGCCAAGCAACTTCGGAAGAGGTTTTCAAAGCAGGTAATGACAACAGGGCAGAAAGTTTTATTCGAGCATCAAGGAATTAATTATAGCTTTACAGTCAGTCATGTTACTGTTGAGGGCCAAGAAAGGTCTAGTGATAGAGGGATGATTTCGGATGACACATTCATTGCTTTTGAAGCATCACGTGATAGTGGAATTAAGATTATCAACCAGCGTGATGGTACTACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTGAGTCTCTGGGTATTGGTGGCCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTCAAGGGCATGCTGCTTTATGGTCCTCCTGGAACTGGAAAGACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGCAAGGAACCGAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTGGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGATCAGAGGAACCTAGGGGATGAAAGTGATTTGCATGTTATTATATTTGATGAAATTGATGCTATTTGTAAGTCCAGAGGCTCAACTCGAGATGGTACAGGGGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAATCGCTAAACAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCACTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTCCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCATGATGTGAACCTTCAAGAGCTTGCTGCTCGAACTAAAAACTACAGTGGTGCGGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGAAGATCTCACTAAGCCAGTGGAGGAGGAAAATATTAAGGTTACGATGGAAGACTTTTTGAATGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGATCTTGAGCGATGCAGACTCCATGGCATGGTGGAGTGTGGTGGTCGGCACAAGCACATTTATCAAAGAGCAATGACAATTGTTGAGCAAGTTAAAGTGAGTAAAGGAAGCCCTCTTGTTACTTGTCTTCTGGAAGGTTCTCGTGGCAGTGGTAAAACCGCACTTGCAGCTACTGTAGGTATTGATAGTGACTTCGCATATGTCAAGATAATTTCAGCTGAAACAATGATCGGTCTACATGAGAGCACTAAATGTGCCCAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCTTTGAGTGTCATTGTTCTTGATGACATTGAGAGATTATTGGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATCTCTCAGACACTACTGGTCCTGCTCAAAAAGCTACCTCCGAAGGGGAAAAAACTCATGGTAATTGGTACAACAAGTGAGGTCGACTTTTTGGATTCAATTGGTTTTTGTGATACATTCTCCATAACTTACAATGTGCCCACCTTGAACAAAGAAGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATTGATTCTGCCGCAGAGGCATTGGATAATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGTGAATCTGCCGAAGCTATCTATTCTGGCAAAGAGAATATTATATCTCATTTCTACAATTACCTTGGGGATGTTGTCAGATTAGTTTTTGCGGAGGCCTTATCAACCACTGTTGCTTGCTTATGCTGA 2319 0.4191 METPFLLSSDLQQEKARSDSNNGGTILWIFICFDLHGRHKYTFPGTRPNQPRLHLRLRSPQIRRPRSRQPIPSFHWRFLQNTAHESIRGGHIALNSIQRRCAKVSSGESVDVARFVPPENFNLAVLTLELDFIKRAGSRNEQIDAIVLAKQLRKRFSKQVMTTGQKVLFEHQGINYSFTVSHVTVEGQERSSDRGMISDDTFIAFEASRDSGIKIINQRDGTTSNIFKQKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRNLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAHDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMEDFLNALHEVIPAFGASTDDLERCRLHGMVECGGRHKHIYQRAMTIVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFAYVKIISAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKKLPPKGKKLMVIGTTSEVDFLDSIGFCDTFSITYNVPTLNKEDAKKVLEQLNVFADEDIDSAAEALDNMPIKKLYMLIEMAAQGESAEAIYSGKENIISHFYNYLGDVVRLVFAEALSTTVACLC 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03587 772 Gene3D - 118 215 - -
Trre7g03587 772 Gene3D - 226 416 IPR027417 -
Trre7g03587 772 Gene3D - 417 504 - -
Trre7g03587 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 514 IPR027417 -
Trre7g03587 772 Gene3D - 78 115 - -
Trre7g03587 772 SMART AAA_5 551 689 IPR003593 GO:0016887
Trre7g03587 772 SMART AAA_5 271 418 IPR003593 GO:0016887
Trre7g03587 772 CDD RecA-like_NSF-SEC18_r1-like 238 414 - -
Trre7g03587 772 SUPERFAMILY Cdc48 domain 2-like 118 219 IPR029067 -
Trre7g03587 772 PANTHER VESICULAR-FUSION PROTEIN NSF 80 755 IPR039812 GO:0016887|GO:0035494
Trre7g03587 772 Gene3D - 513 684 IPR027417 -
Trre7g03587 772 ProSitePatterns AAA-protein family signature. 386 404 IPR003960 GO:0005524|GO:0016887
Trre7g03587 772 FunFam Vesicular-fusion ATPase SEC18 227 417 - -
Trre7g03587 772 Pfam AAA+ lid domain 442 497 IPR041569 -
Trre7g03587 772 FunFam Vesicle-fusing ATPase 417 504 - -
Trre7g03587 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 726 IPR027417 -
Trre7g03587 772 Pfam ATPase family associated with various cellular activities (AAA) 275 415 IPR003959 GO:0005524|GO:0016887
Trre7g03587 772 Pfam ATPase family associated with various cellular activities (AAA) 556 670 IPR003959 GO:0005524|GO:0016887
Trre7g03587 772 FunFam Vesicle-fusing ATPase 119 215 - -
Trre7g03587 772 FunFam vesicle-fusing ATPase isoform X1 513 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03587 Trre-Chr7 42869008 42879989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03587 266 502 Calmodulin-binding Proteins AT3G56690 36.905 2.36e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03587 K06027 - gmx:100779259 1164.83