Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03582 ATGGCCTTTGAGCATGAAGACTTCATTTCACAACAAGATTGGAAAGGCACTAGAAATTCTGTCACAGAAACAGACAAGAATTGTGACAGTTGTTTTGATTGCAACATCTGTTTAGATTTTGCGCATGAACCAGTTGTAACACTATGTGGTCACCTTTACTGCTGGTCCTGCATCTATAAATGGCTCTTTGTGCAAAGTGCCTCTCTTGCACCTGATGAGCCCCCACAATGTCCAGTTTGTAAGGATGGTATATCTCACACCAAAATGGTCCCTCTTTATGGCAGGGGCCAGAGTACCTTATCTCTCGGTGATCGCGACCGCGACAGTAAATCTACCATCCAAGATATTTCTATACCGCCGAGACCATCTGCATCAGCAATTCAATCTCTATTGGCAATGGCAACATCACCTCAAAATCAAAATTGTCAACAACTTCCGTATCGCAATCCTTACCAGAATCAGCATATTAACTCTCCTCCGTACCAAGAGAATGATGTTGAAACTTCACAAATGCTCAATCTTGGTAGCTTTATGTCACCAATATTCCCTCACTATGTCTTTGGTAACTCAGGAAATTCAGACAGTTCTAGGTGGAGAAGGCAAGAGATGCTGGCAAACAAATCATTGAACAGAATATCATTTTTTCTATTTTTATGCTTTGTCCTTTGTTTGATCCTCTTCTGA 684 0.4123 MAFEHEDFISQQDWKGTRNSVTETDKNCDSCFDCNICLDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVPLYGRGQSTLSLGDRDRDSKSTIQDISIPPRPSASAIQSLLAMATSPQNQNCQQLPYRNPYQNQHINSPPYQENDVETSQMLNLGSFMSPIFPHYVFGNSGNSDSSRWRRQEMLANKSLNRISFFLFLCFVLCLILF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03582 227 SUPERFAMILY RING/U-box 29 93 - -
Trre7g03582 227 SMART ring_2 34 80 IPR001841 -
Trre7g03582 227 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Trre7g03582 227 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Trre7g03582 227 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Trre7g03582 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 169 IPR013083 -
Trre7g03582 227 MobiDBLite consensus disorder prediction 98 118 - -
Trre7g03582 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03582 Trre-Chr7 42824758 42825441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03582 8 213 C3H Transcription Factor Family AT4G27470 39.269 8.80e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03582 K10666 - gmx:100779793 244.202