Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03580 ATGCAAAGCCAACAAGTCACCAAAGAAGACGACGACGGCCCGCCACCCGGTTGGCAACCTATCCCCACTCCGCTACGCCCACCGCCAAAGCCACTTACATCCGGTTTTGCTCAAATGGTCTGTGGTTCTTGTCGCCGCCTGCTTTCATATCCACAAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTGAAGTGTGGGAGTTGTGCGGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCATCATGCCAGTTCGTGACAGAAATTGGGGCGAACAACAAGCGGCCTCCATGGTCTGAACAACAAAACAAACCAACTCCTCCCAAAACTAGTTGTTAG 390 0.4923 MQSQQVTKEDDDGPPPGWQPIPTPLRPPPKPLTSGFAQMVCGSCRRLLSYPQGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCQFVTEIGANNKRPPWSEQQNKPTPPKTSC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03580 129 Pfam LSD1 zinc finger 41 65 IPR005735 -
Trre7g03580 129 Pfam LSD1 zinc finger 79 103 IPR005735 -
Trre7g03580 129 MobiDBLite consensus disorder prediction 1 31 - -
Trre7g03580 129 NCBIfam zinc finger domain, LSD1 subclass 76 104 IPR005735 -
Trre7g03580 129 NCBIfam zinc finger domain, LSD1 subclass 38 68 IPR005735 -
Trre7g03580 129 MobiDBLite consensus disorder prediction 109 129 - -
Trre7g03580 129 MobiDBLite consensus disorder prediction 15 31 - -
Trre7g03580 129 PANTHER PROTEIN LSD1 7 126 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03580 Trre-Chr7 42813486 42815371 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre7g03580 zf-LSD1 8.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03580 - - gmx:100780865 217.238