Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03579 ATGATGCAAAGCCAACAAGTCACCAAAGAAGACGACGACGGCCCGCCACCCGGTTGGCAACCTATCCCCACTCCGCTACGCCCACCGCCAAAGCCACTTACATCCGGTTTTGCTCAAATGGTCTGTGGTTCTTGTCGCCGCCTGCTTTCATATCCACAAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTGAAGTGTGGGAGTTGTGCGGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCATCATGCCAGTTCGTGACAGAAATTGGGGCGAACAACAAGCGGCCTCCATGGTCTGAACAACAAAACAAACCAACTCCTCCCAAAACTAGTTGTTAG 393 0.4911 MMQSQQVTKEDDDGPPPGWQPIPTPLRPPPKPLTSGFAQMVCGSCRRLLSYPQGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCQFVTEIGANNKRPPWSEQQNKPTPPKTSC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03579 130 NCBIfam zinc finger domain, LSD1 subclass 77 105 IPR005735 -
Trre7g03579 130 NCBIfam zinc finger domain, LSD1 subclass 39 69 IPR005735 -
Trre7g03579 130 Pfam LSD1 zinc finger 80 104 IPR005735 -
Trre7g03579 130 Pfam LSD1 zinc finger 42 66 IPR005735 -
Trre7g03579 130 MobiDBLite consensus disorder prediction 16 32 - -
Trre7g03579 130 PANTHER PROTEIN LSD1 8 127 IPR040319 -
Trre7g03579 130 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03579 Trre-Chr7 42813483 42815371 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre7g03579 zf-LSD1 8.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03579 - - gmx:100780865 217.238