Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03540 ATGGCTTCTACTTCAAGAAGATTACCAACACCTCAAGAAAGAGAAAAATGGAAACACTTTTTTGACACTATCATAGATCCTAAACTGGCACGAATTGAAATCCCTCAACCTTTTTTCCACAAAATGAAAAGTGAGTTTATAAAACACACATTTAGTTGGATTAGGGGTCCAAAGAAGATGAAAATCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAATGTGTGTTTCTCGATTTTTTGGATTTGTTATACCAACAAGGGTGACACTTAGCTATGTGATTGAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCGGAGGAAACTTTGAAAAGGAAACATCAAAATGATGATCAAGATGAGCCAAATTCCAAGAGGTGCAAGAGACCTAAAGGCAACAAACAAGCTTTGTATTTAAAGTCCCCCCTTCCATGTCAAAATTTCAAGAATAATGATGCTCAAGATGAGCCAAATTCCAAGAGGTGCAAAAGGCCTAGAGGCAACAAACAAGCTGTGTATTTGAAGTCCCCCCCTCCATGTCAAAAACAGAAAATTCTGAAGTCTACCCCAAAGCCAAATTTGAAGATTCGTGCATCTGAGAGAAAAAAAGATTTGAAGTCCACACCAAAGAAATCAAACAAACAACATCAGGAGAAGATTGTAACTACAGCTGCTGCAGCTGATGCAAGACCTCAAGTCATGCATTTTTCTAAGCAATTGTCTACATTGTTTTTGGGAGAAAAACAAAACAAGATGTTGGTCCAAGCTGGAGCAGGAGATACATTCTCTTGCAAGCTTATCACAGCGGGAAGGAATGCAGCTGAAAAATATATATCAAAAGAGTGGTCCAAATTTGTGAGAAGAAACAACCTCCAAGCTGGAGACAAGCTCATTTTCACTCTTCAGAACCCACCAACAAAACTCCTGATTCAGATCATCCGTTGTAGTGTGCACGACTGA 1005 0.3891 MASTSRRLPTPQEREKWKHFFDTIIDPKLARIEIPQPFFHKMKSEFIKHTFSWIRGPKKMKIMVRYLQSNSGIKLSSGMCVSRFFGFVIPTRVTLSYVIEENTFWMRIYPPLQPVKTEFPPEETLKRKHQNDDQDEPNSKRCKRPKGNKQALYLKSPLPCQNFKNNDAQDEPNSKRCKRPRGNKQAVYLKSPPPCQKQKILKSTPKPNLKIRASERKKDLKSTPKKSNKQHQEKIVTTAAAADARPQVMHFSKQLSTLFLGEKQNKMLVQAGAGDTFSCKLITAGRNAAEKYISKEWSKFVRRNNLQAGDKLIFTLQNPPTKLLIQIIRCSVHD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03540 334 MobiDBLite consensus disorder prediction 209 232 - -
Trre7g03540 334 MobiDBLite consensus disorder prediction 121 143 - -
Trre7g03540 334 ProSiteProfiles B3 DNA-binding domain profile. 234 331 IPR003340 GO:0003677
Trre7g03540 334 SUPERFAMILY DNA-binding pseudobarrel domain 243 329 IPR015300 -
Trre7g03540 334 CDD B3_DNA 252 329 IPR003340 GO:0003677
Trre7g03540 334 Gene3D - 210 331 IPR015300 -
Trre7g03540 334 Pfam B3 DNA binding domain 262 329 IPR003340 GO:0003677
Trre7g03540 334 MobiDBLite consensus disorder prediction 121 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03540 Trre-Chr7 42037400 42039182 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g03540 B3 9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03540 - K22381 tpra:123904760 182.57