Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03536 ATGGAGCCCAATGAAATTGAAAACCTTTTTCGAAACCTTCTGTATGATTACCTCAAGAAGAGTGGATTGTCAAACACTGCTGAGAGTTTGAAAAATGAAGCTCAAATTACTGGACAAACTCCTCCTGAATTTAATCGATCTACGGACGGATTCTTGCACGACTTATGGATGTCATTCTATAACATGTACTATAAGTATATCTCTATGCAAGAGAGAACAAGATTATCCAGTCAGACTCAGGTCCCAAACATTGGTGCTATAATGGACAACATCCCTCAAATAATTCGGGAAGGGTATTTTATTCGACAGCTCGCACGTTTTCCAAGCCGAGAGACACTTTTGTCCTGCGATTTTTCATCAGATGGAAAATTTGTGGCAAGTGGCGGATTTGGGACAAAGGCTTTCGTTTGCAACCGGGAGTCTAGTGAATCTTTTTATACATCAGAGTCACATGTATCTGCCATCTTAGAAGTTAGATTTCAACCAGGAACAACTATATTTGCAACATCTTCTACTGATAAAACTGTAAAGTTATGGGATGCAAAAAGTCCTGAAAACGCAGTATACGAATTCACATATAATGGGATAGTAAGATCATTGGACTTCCACCCAACAGAAAAAATTCTTTGCTCGTCTGATACCCGTGATGAACTTAAAGTGTGGAATCTCGTTGAGCATGTTAGGACGAACCACGCTATGGCAGATGTAAGCATAGTGAGATTTCAGCCTGGATCAGGGAGGCTTTTGGCAGTTGCCGTTCGAAATGTTATCAACATACTTGATTTTGAGACTTTTATTGTTCTGAATTGTCTCCGGGGGCACGTCAAACATATTTGTTCCATATGTTGGGATGTCACTGGGCAAACGATTGCCTCTGTCAGTGAAGATAGTGTGCGTGTCTGGTTGCTTTCTATGAACGGACAGTGCTTATACGAGTATCCATCAAACGGGAAGATATTTCGGTCCATCATATTTCATCCTCAACGCCGTAACATCTTAGTTGTTGGTGGTTTTCAGTGCATGGAATTGTTGATTCTTGAGTGCAATGGGAAAATTCGCAGTATTGATTGCTCTTTTACATCAATTACTGGACTAGCAGCTTGTATACAAAAGGAATTATTTGCTTCAACTAGCAATGATTCTGTGCCTGTGGTGAACATATGGAAATGA 1170 0.4017 MEPNEIENLFRNLLYDYLKKSGLSNTAESLKNEAQITGQTPPEFNRSTDGFLHDLWMSFYNMYYKYISMQERTRLSSQTQVPNIGAIMDNIPQIIREGYFIRQLARFPSRETLLSCDFSSDGKFVASGGFGTKAFVCNRESSESFYTSESHVSAILEVRFQPGTTIFATSSTDKTVKLWDAKSPENAVYEFTYNGIVRSLDFHPTEKILCSSDTRDELKVWNLVEHVRTNHAMADVSIVRFQPGSGRLLAVAVRNVINILDFETFIVLNCLRGHVKHICSICWDVTGQTIASVSEDSVRVWLLSMNGQCLYEYPSNGKIFRSIIFHPQRRNILVVGGFQCMELLILECNGKIRSIDCSFTSITGLAACIQKELFASTSNDSVPVVNIWK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03536 389 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 7 68 IPR044716 GO:0003714
Trre7g03536 389 Gene3D - 95 230 IPR015943 GO:0005515
Trre7g03536 389 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 38 IPR006594 GO:0005515
Trre7g03536 389 Gene3D - 231 389 IPR015943 GO:0005515
Trre7g03536 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Trre7g03536 389 Pfam WD domain, G-beta repeat 269 301 IPR001680 GO:0005515
Trre7g03536 389 Pfam WD domain, G-beta repeat 149 180 IPR001680 GO:0005515
Trre7g03536 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 183 - -
Trre7g03536 389 SMART WD40_4 184 222 IPR001680 GO:0005515
Trre7g03536 389 SMART WD40_4 100 138 IPR001680 GO:0005515
Trre7g03536 389 SMART WD40_4 264 302 IPR001680 GO:0005515
Trre7g03536 389 SMART WD40_4 306 347 IPR001680 GO:0005515
Trre7g03536 389 SMART WD40_4 141 180 IPR001680 GO:0005515
Trre7g03536 389 SMART WD40_4 348 389 IPR001680 GO:0005515
Trre7g03536 389 Pfam LisH 15 34 IPR006594 GO:0005515
Trre7g03536 389 SUPERFAMILY WD40 repeat-like 111 388 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03536 Trre-Chr7 41962606 41964859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03536 80 303 U-box Gene Family AT2G33340 24.153 7.98e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03536 - - tpra:123919071 509.99