Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03516 ATGAACCCTTCCAATGAAGAAATTTTTCAAATGTATCTCTATGATTACCTTATTCGACGAGGATTGTCCTACACCGCTGAAATGTTCAGAAAAGAAGCACAAGTTACAACAAAACCTCCTTTAGAATTTCATGAATATCCACATGGATTCTTGCATGAATTTTGGCTTTTACTTCATGATGACATGTATAATCCTATGCTACAAAAGAAGCCACCACCCTCTAATCAGGTCCTAAATGTTGGTACTAGTAGGAACACTACTACCCCTCAAATATATCAAGAAGGATATTCTATTAAGTTCCTTGCAACTTTTCCAAGCGTCGACTTGCTTTCGTCGTGTGATTTTTCGTCGGATGGAAAGGTTTTGGCAAGTGGTGGATTTGGGAGGAAGGCTTTAATTTGCTACTTGGATGCTTGTGATTATGTTAATACAACACAGTCACATTTAGGTCCCATATCAGAAATTAGATTTCAACCAGGAACAAATATATTTGCAACTTGTTCATCTGATAAAATAGTAAAATTATGGGATTCAAGCATACCTGGAACAGTGTTGTTTGATCTTACTGGACATAATGGTGTGGTTAAGTCATTGGATTTTCATCCAATTGAAACACTTCTTTGCTCATCTGATAGCTTTGATGTTATTGAAGTATGGGATCTCATTAACTGTGTTAGGATGAAAAACTTTATGGCTGGTGGACAACAAATAAGATTTCAGCCTGTTGTCGGGAAGTTTTTGGCGGTTGCTAATAGAAATGTTATCACCATACTTGATATTCAGACTTGGCATGTTCAAAACCGATTTCAAGGACACAACAAAGAAATTTGTTCCATATGTTGGGATGCACAGGGGCAAATGATTGCTTCTGTTACTGAAGATTGTGCACGTGTATGGTCGCTTGCGTTACCCGGACAATACCTATACGAGTATCAATCAAATGGAAAGAGGTTTCGATCCATCATATTCCATCCTAGATACCGTAATGTACTACTTATCGGTGGATATGAGAACATGGAATTGTGGATTCCTGAGACAGGACAAGTATATCTTATTCCTGCTCATACTAATGCAACAGTTACTGGACTAGCAGCTTGTACACAAAATGAATTCATTGCATCATGTAGCAGTGACTGTACAGTGAAAATATGGAAATGA 1158 0.3756 MNPSNEEIFQMYLYDYLIRRGLSYTAEMFRKEAQVTTKPPLEFHEYPHGFLHEFWLLLHDDMYNPMLQKKPPPSNQVLNVGTSRNTTTPQIYQEGYSIKFLATFPSVDLLSSCDFSSDGKVLASGGFGRKALICYLDACDYVNTTQSHLGPISEIRFQPGTNIFATCSSDKIVKLWDSSIPGTVLFDLTGHNGVVKSLDFHPIETLLCSSDSFDVIEVWDLINCVRMKNFMAGGQQIRFQPVVGKFLAVANRNVITILDIQTWHVQNRFQGHNKEICSICWDAQGQMIASVTEDCARVWSLALPGQYLYEYQSNGKRFRSIIFHPRYRNVLLIGGYENMELWIPETGQVYLIPAHTNATVTGLAACTQNEFIASCSSDCTVKIWK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03516 385 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Trre7g03516 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 221 IPR001680 GO:0005515
Trre7g03516 385 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 66 IPR044716 GO:0003714
Trre7g03516 385 CDD WD40 111 385 - -
Trre7g03516 385 SUPERFAMILY WD40 repeat-like 109 385 IPR036322 GO:0005515
Trre7g03516 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 385 - -
Trre7g03516 385 SMART Lish 5 37 IPR006594 GO:0005515
Trre7g03516 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 177 IPR001680 GO:0005515
Trre7g03516 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Trre7g03516 385 Pfam LisH 14 33 IPR006594 GO:0005515
Trre7g03516 385 Pfam WD domain, G-beta repeat 266 299 IPR001680 GO:0005515
Trre7g03516 385 Pfam WD domain, G-beta repeat 353 385 IPR001680 GO:0005515
Trre7g03516 385 Pfam WD domain, G-beta repeat 144 177 IPR001680 GO:0005515
Trre7g03516 385 Gene3D - 96 234 IPR015943 GO:0005515
Trre7g03516 385 Gene3D - 235 385 IPR015943 GO:0005515
Trre7g03516 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 221 - -
Trre7g03516 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 385 IPR001680 GO:0005515
Trre7g03516 385 SMART WD40_4 97 135 IPR001680 GO:0005515
Trre7g03516 385 SMART WD40_4 304 343 IPR001680 GO:0005515
Trre7g03516 385 SMART WD40_4 345 385 IPR001680 GO:0005515
Trre7g03516 385 SMART WD40_4 181 220 IPR001680 GO:0005515
Trre7g03516 385 SMART WD40_4 138 177 IPR001680 GO:0005515
Trre7g03516 385 SMART WD40_4 262 300 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03516 Trre-Chr7 41752361 41754323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03516 106 301 U-box Gene Family AT1G04510 25.121 1.88e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03516 - - psat:127101304 593.964