Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03515 ATGGCTGCTTCACCTTCTTCAGCTCTCAATTCCCTCTCTTCTCTCTCTTTCCGTTCTTCATCTTCTTGTTTCTCTCTCCTCCCCACTACCAACAAACTCACATTCCCTCTTCTCACTAAAACAACCCCACTCTCATTCTCCTCCTTCACCGTCAAATCCACCACCTCTTCCGAACAACAACAAGAAGACCTTCCATTCAACCCACCCGAAATCCCCGAAGATTTCATCGACCCACCTTCCATCTACGACGAACCAGAAGAAAACGAAGACGAAATTGCAGCCGCTTTTGAAGAGCTTTACGGTGTGGGCTACAGTGGAGTTAGTGTGTTGGGAAATGACGTATTTGAAATGGATTCAAAGAAGAAGAAGGATACTGGAATTGGTGGTTCGAAGAAGAAACAGAAAGGGAAAATAAGAGATGGGTTTGAAGAAAGAGTTGTTCAAGTTAGAAGGGTTACTAAGGTTGTTAAAGGTGGGAAACAAATGAGGTTTAGAGCTATTGTTGTTGTTGGTGATAAGAATGGACAAGTTGGTGTTGGTGTTGGTAAAGCTAAAGAAGTTATTTCTGCTGTTCAGAAATCTGCTATTGATGCTAGAAGGAATATTATTAGAGTTCCCATGACTAAGTACTTGACTTTTCCTCATAGAGCTGACGGAGATTTTGGAGCAGCAAAGGTGATGCTTAGACCCGCTTCTCCCGGTACCGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAATTGGCAGGTGTTGAAAATGCTTTGGGGAAACAAATAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTTGCTGCAGTGCTGAAAATGAAGCAGTACAGTGAGGTCGCCGAAGAGCGTGGAATCCCTATGGAAGAGTTATGGAAGTAA 897 0.4359 MAASPSSALNSLSSLSFRSSSSCFSLLPTTNKLTFPLLTKTTPLSFSSFTVKSTTSSEQQQEDLPFNPPEIPEDFIDPPSIYDEPEENEDEIAAAFEELYGVGYSGVSVLGNDVFEMDSKKKKDTGIGGSKKKQKGKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKNGQVGVGVGKAKEVISAVQKSAIDARRNIIRVPMTKYLTFPHRADGDFGAAKVMLRPASPGTGVIAGGSVRIVLELAGVENALGKQIGSDNALNNARATVAAVLKMKQYSEVAEERGIPMEELWK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03515 298 ProSiteProfiles S5 double stranded RNA-binding domain profile. 142 205 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre7g03515 298 Pfam Ribosomal protein S5, N-terminal domain 142 206 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre7g03515 298 ProSitePatterns Ribosomal protein S5 signature. 159 191 IPR018192 -
Trre7g03515 298 Gene3D - 209 297 IPR014721 -
Trre7g03515 298 FunFam 30S ribosomal protein S5 131 203 - -
Trre7g03515 298 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 122 293 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre7g03515 298 SUPERFAMILY Ribosomal protein S5 domain 2-like 212 290 IPR020568 -
Trre7g03515 298 SUPERFAMILY dsRNA-binding domain-like 139 207 - -
Trre7g03515 298 Pfam Ribosomal protein S5, C-terminal domain 219 289 IPR005324 GO:0003735|GO:0005840|GO:0006412
Trre7g03515 298 FunFam 30S ribosomal protein S5 207 298 - -
Trre7g03515 298 Gene3D - 139 203 - -
Trre7g03515 298 MobiDBLite consensus disorder prediction 52 71 - -
Trre7g03515 298 NCBIfam 30S ribosomal protein S5 141 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
Trre7g03515 298 Hamap 30S ribosomal protein S5 [rpsE]. 117 295 IPR005712 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03515 Trre-Chr7 41749291 41751809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03515 142 298 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.303 1.84e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03515 K02988 - gmx:100787105 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03515 7 41749291 41751809 Trre7g03515 7 41749291 41751809 ECH