Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03514 ATGGAAAATTTGTTTGCGCAATATTCCACCAACCCTTCATCATCCACCACTAGCACTCCCATCTCCCCTTCTTTCTCATCCTTAAATGTAATCATTTCACAACAAAATGCGGATCCTTTCCAGATTAATAATATTCACCTCTCTAATAATAGTGGACATCCATTTTCCTTTCCTTTAAGTCCATTTTCCTTTCATCAAGGCAATTTCATTCCAACTGGACAGAGTCATGTTTCATTGATAAGTCCAACTACCTTTCAAATTCAAGCTCAAATCGAAGATGGTAGGAAGAAGATTGAAGCTACGAGGGGGAAAATTGCCAGGGAACAAAAGAAACAAATAATACAAAAACATAGAATTGTTGCTGCTACTAAGGCCCCAGAAGAGAGAATAAGGAGACAACGTTACCAAGAGATCCAACATAGAACTCCACATATTTTTTTCACTCCAGATGGGAAGCGACTTGAAGAAATTCTGACAAAGAAGTTGAGTGCCAGCGATGTTAACACAGTTGGCCGCATTGTCCTCCCAAAGAGGGGGGCTGAGAAAATACTTCCAACGCCTACCAGAGAAGGGATAACAATTGTTTTCAAGGATATATGCTCTGCACTTGAATGGAAAGTTAAGTTCAGGTACTGGATTAATACTAAAAGTAGAATGTATGTTCTCGAAAATACAGGAGATCTAGTGAATCATTACAAACTATGTATCGGAGATTATTTCAGCCTCTATGAGGACAGATCTAAAATCATGTATGTGTACCTAAAGAAGGCTTGTGATCTACCGACACTTGAGCTATTTCCTTATAGAGACCAAGGCAAGGAAACAGAACCGGTAGAATCAATCAACCAACAACTATCATCAAATAGTATGGAATTGCAAGCACCTAATCAATTAGTTGGTCAAAGTACCAACAAAATTATGACATCTTGTGTCTTGGACAAAACCATTTCGATGGATGGTGATAGTGATGATGATGATGGTGTTTGTGGTGATGGTGAGCAGCAATACAATTTGGACATATTCTATAAGAGCCTTGGCAATATTTGTGATATTTACTAG 1059 0.3834 MENLFAQYSTNPSSSTTSTPISPSFSSLNVIISQQNADPFQINNIHLSNNSGHPFSFPLSPFSFHQGNFIPTGQSHVSLISPTTFQIQAQIEDGRKKIEATRGKIAREQKKQIIQKHRIVAATKAPEERIRRQRYQEIQHRTPHIFFTPDGKRLEEILTKKLSASDVNTVGRIVLPKRGAEKILPTPTREGITIVFKDICSALEWKVKFRYWINTKSRMYVLENTGDLVNHYKLCIGDYFSLYEDRSKIMYVYLKKACDLPTLELFPYRDQGKETEPVESINQQLSSNSMELQAPNQLVGQSTNKIMTSCVLDKTISMDGDSDDDDGVCGDGEQQYNLDIFYKSLGNICDIY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03514 352 SMART B3_2 158 258 IPR003340 GO:0003677
Trre7g03514 352 MobiDBLite consensus disorder prediction 1 20 - -
Trre7g03514 352 Pfam B3 DNA binding domain 159 248 IPR003340 GO:0003677
Trre7g03514 352 CDD B3_DNA 157 252 IPR003340 GO:0003677
Trre7g03514 352 Gene3D - 147 261 IPR015300 -
Trre7g03514 352 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 134 255 IPR044800 GO:0003700
Trre7g03514 352 SUPERFAMILY DNA-binding pseudobarrel domain 157 253 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03514 Trre-Chr7 41734350 41736630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03514 148 254 B3 DNA Binding Superfamily AT1G28300 47.222 1.19e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g03514 B3 8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03514 K09287 - psat:127102899 255.373